Marine Biogeochemistry analysis suite

Recipe to evaluate the marine biogeochemistry models of CMIP5. There are also some physical evaluation metrics here too. This work based on the BGC-val toolkit GMD-2018-103. DOI: https://doi.org/10.5194/gmd-11-4215-2018 Written by Lee de Mora, Plymouth Marine Laboratory, ledm@pml.ac.uk

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References

Diag_Timeseries_Volume_Average_Vs_Woa

Global volume average time series (WOA observations)

Diag Timeseries Volume Average Vs Woa: Global Volume Average Timeseries

Time series of Dissolved Nitrate Concentration
Time series of Dissolved Nitrate Concentration

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Time series of Dissolved Oxygen Concentration
Time series of Dissolved Oxygen Concentration

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Time series of Dissolved Silicate Concentration
Time series of Dissolved Silicate Concentration

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Time series of Sea Water Potential Temperature
Time series of Sea Water Potential Temperature

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Time series of HadGEM2-ES Sea Water Potential Temperature
Time series of HadGEM2-ES Sea Water Potential Temperature

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Time series of HadGEM2-ES Dissolved Nitrate Concentration
Time series of HadGEM2-ES Dissolved Nitrate Concentration

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Time series of HadGEM2-ES Dissolved Oxygen Concentration
Time series of HadGEM2-ES Dissolved Oxygen Concentration

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Time series of HadGEM2-ES Dissolved Silicate Concentration
Time series of HadGEM2-ES Dissolved Silicate Concentration

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Time series of WOA Sea Water Potential Temperature
Time series of WOA Sea Water Potential Temperature

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Time series of WOA Dissolved Nitrate Concentration
Time series of WOA Dissolved Nitrate Concentration

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Time series of WOA Dissolved Oxygen Concentration
Time series of WOA Dissolved Oxygen Concentration

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Time series of WOA Dissolved Silicate Concentration
Time series of WOA Dissolved Silicate Concentration

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Data files

Diag Timeseries Volume Average Vs Woa: Thetao

Data files

Diag Timeseries Volume Average Vs Woa: No3

Data files

Diag Timeseries Volume Average Vs Woa: O2

Data files

Diag Timeseries Volume Average Vs Woa: Si

Data files

Diag_Timeseries_Volume_Average_No_Obs

Global volume average time series (No observations)

Diag Timeseries Volume Average No Obs: Global Volume Verage Timeseries

Time series of Total Chlorophyll Mass Concentration
Time series of Total Chlorophyll Mass Concentration

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Time series of Dissolved Iron Concentration
Time series of Dissolved Iron Concentration

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Time series of Total Alkalinity
Time series of Total Alkalinity

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Time series of HadGEM2-ES Total Chlorophyll Mass Concentration
Time series of HadGEM2-ES Total Chlorophyll Mass Concentration

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Time series of HadGEM2-ES Dissolved Iron Concentration
Time series of HadGEM2-ES Dissolved Iron Concentration

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Time series of HadGEM2-ES Total Alkalinity
Time series of HadGEM2-ES Total Alkalinity

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Data files

Diag Timeseries Volume Average No Obs: Chl

Data files

Diag Timeseries Volume Average No Obs: Dfe

Data files

Diag Timeseries Volume Average No Obs: Talk

Data files

Diag_Timeseries_Surface_Average_No_Obs

Global volume average time series - no data

Diag Timeseries Surface Average No Obs: Global Volume Average Timeseries

Time series of Total Chlorophyll Mass Concentration
Time series of Total Chlorophyll Mass Concentration

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Time series of Primary Organic Carbon Production by All Types of Phytoplankton
Time series of Primary Organic Carbon Production by All Types of Phytoplankton

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Time series of Total Alkalinity
Time series of Total Alkalinity

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Time series of HadGEM2-ES Primary Organic Carbon Production by All Types of Phytoplankton
Time series of HadGEM2-ES Primary Organic Carbon Production by All Types of Phytoplankton

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Time series of HadGEM2-ES Total Chlorophyll Mass Concentration
Time series of HadGEM2-ES Total Chlorophyll Mass Concentration

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Time series of HadGEM2-ES Total Alkalinity
Time series of HadGEM2-ES Total Alkalinity

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Data files

Diag Timeseries Surface Average No Obs: Talk

Data files

Diag Timeseries Surface Average No Obs: Intpp

Data files

Diag Timeseries Surface Average No Obs: Chl

Data files

Diag Timeseries Surface Average No Obs: Areacello

Data files

Diag_Timeseries_Surface_Average_Vs_Woa

Global surface time series (WOA observations)

Diag Timeseries Surface Average Vs Woa: Global Volume Average Timeseries

Time series of Dissolved Nitrate Concentration
Time series of Dissolved Nitrate Concentration

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Time series of Dissolved Oxygen Concentration
Time series of Dissolved Oxygen Concentration

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Time series of Dissolved Silicate Concentration
Time series of Dissolved Silicate Concentration

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Time series of Sea Water Salinity
Time series of Sea Water Salinity

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Time series of Sea Water Potential Temperature
Time series of Sea Water Potential Temperature

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Time series of HadGEM2-ES Sea Water Salinity
Time series of HadGEM2-ES Sea Water Salinity

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Time series of HadGEM2-ES Sea Water Potential Temperature
Time series of HadGEM2-ES Sea Water Potential Temperature

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Time series of HadGEM2-ES Dissolved Nitrate Concentration
Time series of HadGEM2-ES Dissolved Nitrate Concentration

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Time series of HadGEM2-ES Dissolved Oxygen Concentration
Time series of HadGEM2-ES Dissolved Oxygen Concentration

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Time series of HadGEM2-ES Dissolved Silicate Concentration
Time series of HadGEM2-ES Dissolved Silicate Concentration

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Time series of WOA Sea Water Salinity
Time series of WOA Sea Water Salinity

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Time series of WOA Sea Water Potential Temperature
Time series of WOA Sea Water Potential Temperature

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Time series of WOA Dissolved Nitrate Concentration
Time series of WOA Dissolved Nitrate Concentration

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Time series of WOA Dissolved Oxygen Concentration
Time series of WOA Dissolved Oxygen Concentration

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Time series of WOA Dissolved Silicate Concentration
Time series of WOA Dissolved Silicate Concentration

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Data files

Diag Timeseries Surface Average Vs Woa: Thetao

Data files

Diag Timeseries Surface Average Vs Woa: So

Data files

Diag Timeseries Surface Average Vs Woa: No3

Data files

Diag Timeseries Surface Average Vs Woa: O2

Data files

Diag Timeseries Surface Average Vs Woa: Si

Data files

Diag Timeseries Surface Average Vs Woa: Areacello

Data files

Diag_Timeseries_Scalars

Scalar time series

Diag Timeseries Scalars: Scalar Timeseries

Time series of Sea Water Transport ( Barents Opening  )
Time series of Sea Water Transport ( Barents Opening )

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Time series of Sea Water Transport ( Bering Strait  )
Time series of Sea Water Transport ( Bering Strait )

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Time series of Sea Water Transport ( Canadian Archipelago  )
Time series of Sea Water Transport ( Canadian Archipelago )

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Time series of Sea Water Transport ( Denmark Strait  )
Time series of Sea Water Transport ( Denmark Strait )

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Time series of Sea Water Transport ( Drake Passage  )
Time series of Sea Water Transport ( Drake Passage )

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Time series of Sea Water Transport ( English Channel  )
Time series of Sea Water Transport ( English Channel )

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Time series of Sea Water Transport ( Faroe Scotland Channel  )
Time series of Sea Water Transport ( Faroe Scotland Channel )

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Time series of Sea Water Transport ( Florida Bahamas Strait  )
Time series of Sea Water Transport ( Florida Bahamas Strait )

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Time series of Sea Water Transport ( Fram Strait  )
Time series of Sea Water Transport ( Fram Strait )

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Time series of Sea Water Transport ( Iceland Faroe Channel  )
Time series of Sea Water Transport ( Iceland Faroe Channel )

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Time series of Sea Water Transport ( Indonesian Throughflow  )
Time series of Sea Water Transport ( Indonesian Throughflow )

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Time series of Sea Water Transport ( Mozambique Channel  )
Time series of Sea Water Transport ( Mozambique Channel )

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Time series of Sea Water Transport ( Pacific Equatorial Undercurrent  )
Time series of Sea Water Transport ( Pacific Equatorial Undercurrent )

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Time series of Sea Water Transport ( Taiwan Luzon Straits  )
Time series of Sea Water Transport ( Taiwan Luzon Straits )

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Time series of Sea Water Transport ( Windward Passage  )
Time series of Sea Water Transport ( Windward Passage )

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Time series of HadGEM2-ES Sea Water Transport
Time series of HadGEM2-ES Sea Water Transport

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Data files

Diag Timeseries Scalars: Mfo

Data files

Diag_Profile_Vs_Woa

Global profile (WOA observations)

Diag Profile Vs Woa: Global Profile Vs Woa

Profiles of HadGEM2-ES Sea Water Salinity
Profiles of HadGEM2-ES Sea Water Salinity

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Profiles of HadGEM2-ES Sea Water Potential Temperature
Profiles of HadGEM2-ES Sea Water Potential Temperature

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Profiles of HadGEM2-ES Dissolved Nitrate Concentration
Profiles of HadGEM2-ES Dissolved Nitrate Concentration

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Profiles of HadGEM2-ES Dissolved Oxygen Concentration
Profiles of HadGEM2-ES Dissolved Oxygen Concentration

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Profiles of HadGEM2-ES Dissolved Silicate Concentration
Profiles of HadGEM2-ES Dissolved Silicate Concentration

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Data files

Diag Profile Vs Woa: Thetao

Data files

Diag Profile Vs Woa: So

Data files

Diag Profile Vs Woa: No3

Data files

Diag Profile Vs Woa: O2

Data files

Diag Profile Vs Woa: Si

Data files

Diag_Profile_No_Obs

Global profile (No observations)

Diag Profile No Obs: Global Profile No Obs

Profiles of HadGEM2-ES Total Chlorophyll Mass Concentration
Profiles of HadGEM2-ES Total Chlorophyll Mass Concentration

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Profiles of HadGEM2-ES Dissolved Iron Concentration
Profiles of HadGEM2-ES Dissolved Iron Concentration

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Profiles of HadGEM2-ES Total Alkalinity
Profiles of HadGEM2-ES Total Alkalinity

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Data files

Diag Profile No Obs: Chl

Data files

Diag Profile No Obs: Dfe

Data files

Diag Profile No Obs: Talk

Data files

Diag_Surface_Maps_Vs_Woa

Global Ocean Surface maps vs WOA

Diag Surface Maps Vs Woa: Global Ocean Surface Map

Map of HadGEM2-ES Sea Water Salinity
Map of HadGEM2-ES Sea Water Salinity

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Map of HadGEM2-ES Sea Water Potential Temperature
Map of HadGEM2-ES Sea Water Potential Temperature

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Map of HadGEM2-ES Dissolved Nitrate Concentration
Map of HadGEM2-ES Dissolved Nitrate Concentration

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Map of HadGEM2-ES Dissolved Oxygen Concentration
Map of HadGEM2-ES Dissolved Oxygen Concentration

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Map of HadGEM2-ES Dissolved Silicate Concentration
Map of HadGEM2-ES Dissolved Silicate Concentration

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Map of HadGEM2-ES Ocean Grid-Cell Area
Map of HadGEM2-ES Ocean Grid-Cell Area

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Map of WOA Sea Water Salinity
Map of WOA Sea Water Salinity

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Map of WOA Sea Water Potential Temperature
Map of WOA Sea Water Potential Temperature

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Map of WOA Dissolved Nitrate Concentration
Map of WOA Dissolved Nitrate Concentration

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Map of WOA Dissolved Oxygen Concentration
Map of WOA Dissolved Oxygen Concentration

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Map of WOA Dissolved Silicate Concentration
Map of WOA Dissolved Silicate Concentration

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Data files

Diag Surface Maps Vs Woa: Global Ocean Model Vs Obs

Dissolved Nitrate Concentration [mmol m-3]
Dissolved Nitrate Concentration [mmol m-3]

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Dissolved Oxygen Concentration [mmol m-3]
Dissolved Oxygen Concentration [mmol m-3]

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Dissolved Oxygen Concentration
Dissolved Oxygen Concentration

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Dissolved Silicate Concentration [mmol m-3]
Dissolved Silicate Concentration [mmol m-3]

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Dissolved Silicate Concentration
Dissolved Silicate Concentration

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Sea Water Potential Temperature [celsius]
Sea Water Potential Temperature [celsius]

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Sea Water Salinity [0.001]
Sea Water Salinity [0.001]

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Sea Water Salinity
Sea Water Salinity

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Data files

Diag Surface Maps Vs Woa: Thetao

Data files

Diag Surface Maps Vs Woa: So

Data files

Diag Surface Maps Vs Woa: No3

Data files

Diag Surface Maps Vs Woa: Si

Data files

Diag Surface Maps Vs Woa: O2

Data files

Diag Surface Maps Vs Woa: Areacello

Data files

Diag_Surface_Maps_No_Data

Global Ocean Surface maps - no data

Diag Surface Maps No Data: Global Ocean Surface Map

Map of HadGEM2-ES Surface Downward CO2 Flux
Map of HadGEM2-ES Surface Downward CO2 Flux

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Map of HadGEM2-ES Primary Organic Carbon Production by All Types of Phytoplankton
Map of HadGEM2-ES Primary Organic Carbon Production by All Types of Phytoplankton

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Map of HadGEM2-ES Total Chlorophyll Mass Concentration
Map of HadGEM2-ES Total Chlorophyll Mass Concentration

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Map of HadGEM2-ES Dissolved Iron Concentration
Map of HadGEM2-ES Dissolved Iron Concentration

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Map of HadGEM2-ES Ocean Grid-Cell Area
Map of HadGEM2-ES Ocean Grid-Cell Area

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Data files

Diag Surface Maps No Data: Intpp

Data files

Diag Surface Maps No Data: Fgco2

Data files

Diag Surface Maps No Data: Chl

Data files

Diag Surface Maps No Data: Dfe

Data files

Diag Surface Maps No Data: Areacello

Data files

Diag_Transect_Vs_Woa

Transect maps vs WOA

Diag Transect Vs Woa: Transects Vs Woa

Transect of Dissolved Nitrate Concentration 10.0 mmol m-3 -28.5 W
Transect of Dissolved Nitrate Concentration 10.0 mmol m-3 -28.5 W

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Transect of Dissolved Nitrate Concentration 20.0 mmol m-3 -28.5 W
Transect of Dissolved Nitrate Concentration 20.0 mmol m-3 -28.5 W

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Transect of Dissolved Nitrate Concentration 30.0 mmol m-3 -28.5 W
Transect of Dissolved Nitrate Concentration 30.0 mmol m-3 -28.5 W

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Transect of Dissolved Oxygen Concentration 0.03 mmol m-3 -28.5 W
Transect of Dissolved Oxygen Concentration 0.03 mmol m-3 -28.5 W

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Transect of Sea Water Potential Temperature 0.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 0.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 10.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 10.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 15.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 15.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 20.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 20.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 25.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 25.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 30.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 30.0 celsius -28.5 W

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Transect of Sea Water Potential Temperature 5.0 celsius -28.5 W
Transect of Sea Water Potential Temperature 5.0 celsius -28.5 W

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Transect of HadGEM2-ES Sea Water Salinity -28.5 W
Transect of HadGEM2-ES Sea Water Salinity -28.5 W

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Transect of HadGEM2-ES Sea Water Potential Temperature -28.5 W
Transect of HadGEM2-ES Sea Water Potential Temperature -28.5 W

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Transect of HadGEM2-ES Sea Water Potential Temperature -28.5 W
Transect of HadGEM2-ES Sea Water Potential Temperature -28.5 W

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Transect of HadGEM2-ES Dissolved Nitrate Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Nitrate Concentration -28.5 W

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Transect of HadGEM2-ES Dissolved Nitrate Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Nitrate Concentration -28.5 W

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Transect of HadGEM2-ES Dissolved Oxygen Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Oxygen Concentration -28.5 W

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Transect of HadGEM2-ES Dissolved Oxygen Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Oxygen Concentration -28.5 W

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Transect of HadGEM2-ES Dissolved Silicate Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Silicate Concentration -28.5 W

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Transect of WOA Sea Water Salinity -28.5 W
Transect of WOA Sea Water Salinity -28.5 W

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Transect of WOA Sea Water Potential Temperature -28.5 W
Transect of WOA Sea Water Potential Temperature -28.5 W

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Transect of WOA Sea Water Potential Temperature -28.5 W
Transect of WOA Sea Water Potential Temperature -28.5 W

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Transect of WOA Dissolved Nitrate Concentration -28.5 W
Transect of WOA Dissolved Nitrate Concentration -28.5 W

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Transect of WOA Dissolved Nitrate Concentration -28.5 W
Transect of WOA Dissolved Nitrate Concentration -28.5 W

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Transect of WOA Dissolved Oxygen Concentration -28.5 W
Transect of WOA Dissolved Oxygen Concentration -28.5 W

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Transect of WOA Dissolved Oxygen Concentration -28.5 W
Transect of WOA Dissolved Oxygen Concentration -28.5 W

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Transect of WOA Dissolved Silicate Concentration -28.5 W
Transect of WOA Dissolved Silicate Concentration -28.5 W

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Data files

Diag Transect Vs Woa: Thetao

Data files

Diag Transect Vs Woa: So

Data files

Diag Transect Vs Woa: No3

Data files

Diag Transect Vs Woa: Si

Data files

Diag Transect Vs Woa: O2

Data files

Diag_Transect_No_Data

Transects - no data

Diag Transect No Data: Transects No Data

Transect of HadGEM2-ES Total Chlorophyll Mass Concentration -28.5 W
Transect of HadGEM2-ES Total Chlorophyll Mass Concentration -28.5 W

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Transect of HadGEM2-ES Dissolved Iron Concentration -28.5 W
Transect of HadGEM2-ES Dissolved Iron Concentration -28.5 W

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Data files

Diag Transect No Data: Chl

Data files

Diag Transect No Data: Dfe

Data files

Files

main_log.txt | main_log_debug.txt | recipe_ocean_bgc.yml | figures | data