2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:495 ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:496 Package versions 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:497 ---------------- 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:498 ESMValCore: 2.8.0 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:500 ESMValTool: 2.8.0 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:501 ---------------- 2023-05-11 19:51:28,655 UTC [3254392] INFO esmvalcore._main:502 Using config file /nird/home/yanchun/.esmvaltool/config-NS9560K.yml 2023-05-11 19:51:28,656 UTC [3254392] INFO esmvalcore._main:503 Writing program log files to: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/main_log.txt /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/main_log_debug.txt 2023-05-11 19:51:29,233 UTC [3254392] INFO esmvalcore._main:85 Starting the Earth System Model Evaluation Tool at time: 2023-05-11 19:51:29 UTC 2023-05-11 19:51:29,233 UTC [3254392] INFO esmvalcore._main:89 ---------------------------------------------------------------------- 2023-05-11 19:51:29,233 UTC [3254392] INFO esmvalcore._main:90 RECIPE = /nird/home/yanchun/diagnostics/noresmvaltool/esmvaltool/tested_recipes/recipe_ocean_bgc.yml 2023-05-11 19:51:29,233 UTC [3254392] INFO esmvalcore._main:91 RUNDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run 2023-05-11 19:51:29,234 UTC [3254392] INFO esmvalcore._main:92 WORKDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work 2023-05-11 19:51:29,234 UTC [3254392] INFO esmvalcore._main:93 PREPROCDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc 2023-05-11 19:51:29,234 UTC [3254392] INFO esmvalcore._main:94 PLOTDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots 2023-05-11 19:51:29,234 UTC [3254392] INFO esmvalcore._main:95 ---------------------------------------------------------------------- 2023-05-11 19:51:29,236 UTC [3254392] INFO esmvalcore._main:98 Running tasks using at most 8 processes 2023-05-11 19:51:29,236 UTC [3254392] INFO esmvalcore._main:100 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. 2023-05-11 19:51:29,236 UTC [3254392] INFO esmvalcore._main:103 If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. 2023-05-11 19:51:29,237 UTC [3254392] DEBUG esmvalcore._recipe.check:52 Checking recipe against schema /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe_schema.yml 2023-05-11 19:51:29,375 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,376 UTC [3254392] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-fx.yml 2023-05-11 19:51:29,377 UTC [3254392] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-institutes.yml 2023-05-11 19:51:29,404 UTC [3254392] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-product.yml 2023-05-11 19:51:29,411 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,421 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,421 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,422 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 19:51:29,423 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,423 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,423 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,424 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,428 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,428 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,428 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 19:51:29,428 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,429 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,429 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,429 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,433 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,433 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,434 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 19:51:29,434 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,436 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,436 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,436 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,441 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,441 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,441 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 19:51:29,441 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,442 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,442 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 19:51:29,442 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,446 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,447 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,447 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 19:51:29,447 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,451 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,451 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,451 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 19:51:29,452 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,456 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,456 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 19:51:29,456 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,457 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,462 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,462 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,462 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable intpp in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,463 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,468 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,468 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,468 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,468 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,473 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,473 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,473 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,474 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,474 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,475 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,476 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,477 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,477 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,477 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,482 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,482 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,483 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,483 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,483 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,483 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,484 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,489 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,489 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,489 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,489 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: so, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,490 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,490 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,490 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,495 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,495 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,496 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,496 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,496 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,496 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,497 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,501 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,501 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,502 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,502 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,502 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,502 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,503 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,507 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,508 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,508 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,508 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,508 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,508 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,509 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,510 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,510 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,511 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,511 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,512 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable mfo in diagnostic diag_timeseries_scalars 2023-05-11 19:51:29,512 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: mfo, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,512 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,512 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,517 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,517 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,518 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,518 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,518 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,518 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,519 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,523 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,524 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,524 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,524 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: so, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,524 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,524 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,525 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,530 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,530 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,530 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,530 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,531 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,531 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,531 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,536 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,536 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,536 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,537 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,537 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,537 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,537 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,542 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,542 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,543 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 19:51:29,543 UTC [3254392] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 19:51:29,543 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,543 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_profile_no_obs 2023-05-11 19:51:29,544 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,548 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,549 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,549 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_profile_no_obs 2023-05-11 19:51:29,549 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,554 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,554 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,554 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_profile_no_obs 2023-05-11 19:51:29,555 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 19:51:29,559 UTC [3254392] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 19:51:29,559 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,560 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,561 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,562 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,562 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,562 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,563 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,563 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,564 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable intpp in diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable fgco2 in diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: fgco2, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,565 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,566 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,566 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,566 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,566 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,566 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,567 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,568 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,568 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,569 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,569 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,569 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,569 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,569 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,570 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_transect_no_data 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_transect_no_data 2023-05-11 19:51:29,571 UTC [3254392] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1014 Retrieving diagnostics from recipe 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_scalars 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_profile_no_obs 2023-05-11 19:51:29,572 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,573 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,573 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,573 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_transect_no_data 2023-05-11 19:51:29,573 UTC [3254392] INFO esmvalcore._recipe.recipe:1232 Creating tasks from recipe 2023-05-11 19:51:29,573 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 19:51:29,573 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:29,574 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/thetao 2023-05-11 19:51:29,574 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'thetao' 2023-05-11 19:51:29,574 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,579 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,581 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,581 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,581 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,582 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 19:51:29,582 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:29,582 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,584 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/thetao created. 2023-05-11 19:51:29,584 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:29,584 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/no3 2023-05-11 19:51:29,584 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'no3' 2023-05-11 19:51:29,585 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,586 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,587 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,587 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,587 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,588 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 19:51:29,589 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:29,589 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,590 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/no3 created. 2023-05-11 19:51:29,590 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:29,590 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/o2 2023-05-11 19:51:29,590 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'o2' 2023-05-11 19:51:29,591 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,592 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,592 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,593 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,593 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,594 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 19:51:29,594 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:29,594 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,596 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/o2 created. 2023-05-11 19:51:29,596 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:29,596 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/si 2023-05-11 19:51:29,596 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'si' 2023-05-11 19:51:29,596 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,598 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,598 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,598 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,599 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,599 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 19:51:29,600 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:29,600 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,601 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/si created. 2023-05-11 19:51:29,601 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:29,601 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 19:51:29,601 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 19:51:29,602 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/chl 2023-05-11 19:51:29,602 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'chl' 2023-05-11 19:51:29,602 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,604 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,604 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,604 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,605 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/chl created. 2023-05-11 19:51:29,605 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:29,605 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/dfe 2023-05-11 19:51:29,605 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'dfe' 2023-05-11 19:51:29,606 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,607 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,608 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,608 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,608 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/dfe created. 2023-05-11 19:51:29,609 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:29,609 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/talk 2023-05-11 19:51:29,609 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'talk' 2023-05-11 19:51:29,609 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,610 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,611 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,611 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,612 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/talk created. 2023-05-11 19:51:29,612 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:29,612 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 19:51:29,612 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 19:51:29,612 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/talk 2023-05-11 19:51:29,612 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'talk' 2023-05-11 19:51:29,613 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,614 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,615 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,615 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,616 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/talk created. 2023-05-11 19:51:29,616 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:29,616 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/intpp 2023-05-11 19:51:29,616 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_2D' task for variable 'intpp' 2023-05-11 19:51:29,616 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,618 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,619 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable intpp of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,619 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,620 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/intpp created. 2023-05-11 19:51:29,620 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/intpp will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:29,620 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/chl 2023-05-11 19:51:29,620 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'chl' 2023-05-11 19:51:29,621 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,622 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,622 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,622 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,623 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/chl created. 2023-05-11 19:51:29,623 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:29,623 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/areacello 2023-05-11 19:51:29,623 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 19:51:29,624 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,625 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,625 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,626 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,627 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,627 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 19:51:29,627 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/areacello created. 2023-05-11 19:51:29,627 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:29,627 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 19:51:29,627 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:29,628 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/thetao 2023-05-11 19:51:29,628 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'thetao' 2023-05-11 19:51:29,628 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,631 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,631 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,632 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,632 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,633 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 19:51:29,633 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:29,633 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,634 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/thetao created. 2023-05-11 19:51:29,635 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:29,635 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/so 2023-05-11 19:51:29,635 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'so' 2023-05-11 19:51:29,635 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,638 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,639 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,639 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,639 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'so', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'so', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Salinity', 'modeling_realm': ['ocean'], 'original_short_name': 'so', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_salinity', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'psu', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,640 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 19:51:29,641 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:29,641 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,642 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/so created. 2023-05-11 19:51:29,642 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:29,642 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/no3 2023-05-11 19:51:29,642 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'no3' 2023-05-11 19:51:29,643 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,644 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,645 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,645 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,645 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,646 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 19:51:29,646 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:29,646 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,648 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/no3 created. 2023-05-11 19:51:29,648 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:29,648 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/o2 2023-05-11 19:51:29,648 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'o2' 2023-05-11 19:51:29,648 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,649 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,650 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,650 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,650 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,651 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 19:51:29,652 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:29,652 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,653 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/o2 created. 2023-05-11 19:51:29,653 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:29,653 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/si 2023-05-11 19:51:29,653 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'si' 2023-05-11 19:51:29,654 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,655 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,656 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,656 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,656 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,657 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 19:51:29,657 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:29,657 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,659 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/si created. 2023-05-11 19:51:29,659 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:29,659 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/areacello 2023-05-11 19:51:29,659 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 19:51:29,660 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,660 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,661 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,662 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,663 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,663 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 19:51:29,664 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/areacello created. 2023-05-11 19:51:29,664 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:29,664 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_scalars 2023-05-11 19:51:29,664 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_scalars/Scalar_timeseries 2023-05-11 19:51:29,664 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_scalars/mfo 2023-05-11 19:51:29,664 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_scalar' task for variable 'mfo' 2023-05-11 19:51:29,665 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,667 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable mfo of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 19:51:29,667 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: mfo, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,667 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_scalars/mfo created. 2023-05-11 19:51:29,667 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_scalars/mfo will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc 2023-05-11 19:51:29,668 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_profile_vs_WOA 2023-05-11 19:51:29,668 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 19:51:29,668 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/thetao 2023-05-11 19:51:29,668 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'thetao' 2023-05-11 19:51:29,668 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,671 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,672 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,672 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,672 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,673 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 19:51:29,673 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:29,673 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,675 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/thetao created. 2023-05-11 19:51:29,675 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:29,675 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/so 2023-05-11 19:51:29,675 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'so' 2023-05-11 19:51:29,675 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,678 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,679 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,679 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,679 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'so', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'so', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Salinity', 'modeling_realm': ['ocean'], 'original_short_name': 'so', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_salinity', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'psu', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,680 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 19:51:29,680 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:29,680 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,681 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/so created. 2023-05-11 19:51:29,682 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:29,682 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/no3 2023-05-11 19:51:29,682 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'no3' 2023-05-11 19:51:29,682 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,683 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,684 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,684 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,684 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,685 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 19:51:29,685 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:29,685 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,687 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/no3 created. 2023-05-11 19:51:29,687 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:29,687 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/o2 2023-05-11 19:51:29,687 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'o2' 2023-05-11 19:51:29,688 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,689 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,689 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,689 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,690 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,690 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 19:51:29,691 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:29,691 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,692 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/o2 created. 2023-05-11 19:51:29,692 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:29,692 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/si 2023-05-11 19:51:29,692 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'si' 2023-05-11 19:51:29,693 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,694 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,695 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,695 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,695 UTC [3254392] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_195128'. 2023-05-11 19:51:29,696 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 19:51:29,696 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:29,696 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,697 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/si created. 2023-05-11 19:51:29,698 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:29,698 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_profile_no_obs 2023-05-11 19:51:29,698 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:29,698 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/chl 2023-05-11 19:51:29,698 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'chl' 2023-05-11 19:51:29,699 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,699 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,700 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,700 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,701 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/chl created. 2023-05-11 19:51:29,701 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:29,701 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/dfe 2023-05-11 19:51:29,701 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'dfe' 2023-05-11 19:51:29,702 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,703 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,703 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,703 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,704 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/dfe created. 2023-05-11 19:51:29,704 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:29,704 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/talk 2023-05-11 19:51:29,705 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'talk' 2023-05-11 19:51:29,705 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,706 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,707 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,707 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/talk created. 2023-05-11 19:51:29,708 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_vs_WOA 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/thetao 2023-05-11 19:51:29,708 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'thetao' 2023-05-11 19:51:29,709 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,711 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:29,711 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,712 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 19:51:29,712 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:29,712 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,714 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/thetao created. 2023-05-11 19:51:29,714 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:29,714 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/so 2023-05-11 19:51:29,714 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'so' 2023-05-11 19:51:29,715 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,717 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:29,717 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,718 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 19:51:29,718 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:29,718 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,720 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/so created. 2023-05-11 19:51:29,720 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:29,720 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/no3 2023-05-11 19:51:29,720 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'no3' 2023-05-11 19:51:29,721 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,721 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,721 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,722 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 19:51:29,722 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:29,722 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,724 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/no3 created. 2023-05-11 19:51:29,724 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:29,724 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/si 2023-05-11 19:51:29,724 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'si' 2023-05-11 19:51:29,725 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,726 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,726 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,727 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 19:51:29,727 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:29,727 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,729 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/si created. 2023-05-11 19:51:29,729 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:29,729 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/o2 2023-05-11 19:51:29,729 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'o2' 2023-05-11 19:51:29,730 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,730 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,730 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,731 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 19:51:29,731 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:29,731 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,733 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/o2 created. 2023-05-11 19:51:29,733 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:29,733 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/areacello 2023-05-11 19:51:29,733 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 19:51:29,734 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,735 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,735 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,736 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,736 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,737 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 19:51:29,737 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/areacello created. 2023-05-11 19:51:29,737 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:29,737 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_no_data 2023-05-11 19:51:29,737 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 19:51:29,738 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/intpp 2023-05-11 19:51:29,738 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_2D' task for variable 'intpp' 2023-05-11 19:51:29,738 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,739 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable intpp of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:29,739 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,740 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/intpp created. 2023-05-11 19:51:29,740 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/intpp will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:29,740 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/fgco2 2023-05-11 19:51:29,740 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_2D' task for variable 'fgco2' 2023-05-11 19:51:29,740 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,741 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable fgco2 of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:29,741 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: fgco2, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,742 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/fgco2 created. 2023-05-11 19:51:29,742 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/fgco2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 19:51:29,742 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/chl 2023-05-11 19:51:29,742 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_3D' task for variable 'chl' 2023-05-11 19:51:29,743 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,744 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,744 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,745 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/chl created. 2023-05-11 19:51:29,745 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:29,745 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/dfe 2023-05-11 19:51:29,745 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_3D' task for variable 'dfe' 2023-05-11 19:51:29,745 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,746 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,746 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,747 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/dfe created. 2023-05-11 19:51:29,747 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:29,747 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/areacello 2023-05-11 19:51:29,747 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 19:51:29,748 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,748 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,749 UTC [3254392] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 19:51:29,749 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 19:51:29,750 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:29,750 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 19:51:29,751 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/areacello created. 2023-05-11 19:51:29,751 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:29,751 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_transect_vs_WOA 2023-05-11 19:51:29,751 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 19:51:29,751 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/thetao 2023-05-11 19:51:29,751 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'thetao' 2023-05-11 19:51:29,752 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,754 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:29,754 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,755 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 19:51:29,755 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:29,755 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,757 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/thetao created. 2023-05-11 19:51:29,757 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:29,757 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/so 2023-05-11 19:51:29,757 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'so' 2023-05-11 19:51:29,758 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,760 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:29,760 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,761 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 19:51:29,761 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:29,761 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 19:51:29,763 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/so created. 2023-05-11 19:51:29,763 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:29,763 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/no3 2023-05-11 19:51:29,763 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'no3' 2023-05-11 19:51:29,764 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,765 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,765 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,765 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 19:51:29,766 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:29,766 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,768 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/no3 created. 2023-05-11 19:51:29,768 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:29,768 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/si 2023-05-11 19:51:29,768 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'si' 2023-05-11 19:51:29,768 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,769 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,769 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,770 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 19:51:29,770 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:29,770 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,772 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/si created. 2023-05-11 19:51:29,772 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:29,772 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/o2 2023-05-11 19:51:29,772 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'o2' 2023-05-11 19:51:29,773 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,773 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,773 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,774 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 19:51:29,774 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:29,774 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 19:51:29,776 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/o2 created. 2023-05-11 19:51:29,776 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:29,777 UTC [3254392] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_transect_no_data 2023-05-11 19:51:29,777 UTC [3254392] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_transect_no_data/Transects_no_data 2023-05-11 19:51:29,777 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_no_data/chl 2023-05-11 19:51:29,777 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'chl' 2023-05-11 19:51:29,777 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,778 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,778 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,779 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_no_data/chl created. 2023-05-11 19:51:29,779 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_no_data/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:29,779 UTC [3254392] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_no_data/dfe 2023-05-11 19:51:29,779 UTC [3254392] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'dfe' 2023-05-11 19:51:29,780 UTC [3254392] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 19:51:29,781 UTC [3254392] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:29,781 UTC [3254392] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 19:51:29,782 UTC [3254392] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_no_data/dfe created. 2023-05-11 19:51:29,782 UTC [3254392] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_no_data/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:29,782 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_volume_average_vs_WOA script Global_Volume_Average_timeseries 2023-05-11 19:51:29,782 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/thetao matches ['diag_timeseries_volume_average_vs_WOA/thetao'] 2023-05-11 19:51:29,783 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/no3 matches ['diag_timeseries_volume_average_vs_WOA/no3'] 2023-05-11 19:51:29,783 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/o2 matches ['diag_timeseries_volume_average_vs_WOA/o2'] 2023-05-11 19:51:29,783 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/si matches ['diag_timeseries_volume_average_vs_WOA/si'] 2023-05-11 19:51:29,783 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_volume_average_no_obs script Global_Volume_verage_timeseries 2023-05-11 19:51:29,783 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/chl matches ['diag_timeseries_volume_average_no_obs/chl'] 2023-05-11 19:51:29,784 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/dfe matches ['diag_timeseries_volume_average_no_obs/dfe'] 2023-05-11 19:51:29,784 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/talk matches ['diag_timeseries_volume_average_no_obs/talk'] 2023-05-11 19:51:29,784 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_surface_average_no_obs script Global_Volume_Average_timeseries 2023-05-11 19:51:29,784 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/talk matches ['diag_timeseries_surface_average_no_obs/talk'] 2023-05-11 19:51:29,784 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/intpp matches ['diag_timeseries_surface_average_no_obs/intpp'] 2023-05-11 19:51:29,785 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/chl matches ['diag_timeseries_surface_average_no_obs/chl'] 2023-05-11 19:51:29,785 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/areacello matches ['diag_timeseries_surface_average_no_obs/areacello'] 2023-05-11 19:51:29,785 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_surface_average_vs_WOA script Global_Volume_Average_timeseries 2023-05-11 19:51:29,785 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/thetao matches ['diag_timeseries_surface_average_vs_WOA/thetao'] 2023-05-11 19:51:29,785 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/so matches ['diag_timeseries_surface_average_vs_WOA/so'] 2023-05-11 19:51:29,786 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/no3 matches ['diag_timeseries_surface_average_vs_WOA/no3'] 2023-05-11 19:51:29,786 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/o2 matches ['diag_timeseries_surface_average_vs_WOA/o2'] 2023-05-11 19:51:29,786 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/si matches ['diag_timeseries_surface_average_vs_WOA/si'] 2023-05-11 19:51:29,786 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/areacello matches ['diag_timeseries_surface_average_vs_WOA/areacello'] 2023-05-11 19:51:29,786 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_scalars script Scalar_timeseries 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_scalars/mfo matches ['diag_timeseries_scalars/mfo'] 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_profile_vs_WOA script Global_profile_vs_WOA 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/thetao matches ['diag_profile_vs_WOA/thetao'] 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/so matches ['diag_profile_vs_WOA/so'] 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/no3 matches ['diag_profile_vs_WOA/no3'] 2023-05-11 19:51:29,787 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/o2 matches ['diag_profile_vs_WOA/o2'] 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/si matches ['diag_profile_vs_WOA/si'] 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_profile_no_obs script Global_profile_no_obs 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/chl matches ['diag_profile_no_obs/chl'] 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/dfe matches ['diag_profile_no_obs/dfe'] 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/talk matches ['diag_profile_no_obs/talk'] 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_surface_map 2023-05-11 19:51:29,788 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/thetao matches ['diag_surface_maps_vs_WOA/thetao'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_model_vs_obs 2023-05-11 19:51:29,789 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/thetao matches ['diag_surface_maps_vs_WOA/thetao'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_no_data script Global_Ocean_surface_map 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/intpp matches ['diag_surface_maps_no_data/intpp'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/fgco2 matches ['diag_surface_maps_no_data/fgco2'] 2023-05-11 19:51:29,790 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/chl matches ['diag_surface_maps_no_data/chl'] 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/dfe matches ['diag_surface_maps_no_data/dfe'] 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/areacello matches ['diag_surface_maps_no_data/areacello'] 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_transect_vs_WOA script Transects_vs_WOA 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/thetao matches ['diag_transect_vs_WOA/thetao'] 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/so matches ['diag_transect_vs_WOA/so'] 2023-05-11 19:51:29,791 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/no3 matches ['diag_transect_vs_WOA/no3'] 2023-05-11 19:51:29,792 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/si matches ['diag_transect_vs_WOA/si'] 2023-05-11 19:51:29,792 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/o2 matches ['diag_transect_vs_WOA/o2'] 2023-05-11 19:51:29,792 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_transect_no_data script Transects_no_data 2023-05-11 19:51:29,792 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_no_data/chl matches ['diag_transect_no_data/chl'] 2023-05-11 19:51:29,792 UTC [3254392] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_no_data/dfe matches ['diag_transect_no_data/dfe'] 2023-05-11 19:51:29,792 UTC [3254392] INFO esmvalcore._recipe.recipe:1281 These tasks will be executed: diag_surface_maps_no_data/intpp, diag_timeseries_scalars/Scalar_timeseries, diag_timeseries_volume_average_no_obs/talk, diag_transect_no_data/dfe, diag_timeseries_surface_average_vs_WOA/so, diag_timeseries_surface_average_vs_WOA/si, diag_surface_maps_no_data/fgco2, diag_profile_no_obs/Global_profile_no_obs, diag_profile_no_obs/talk, diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries, diag_profile_vs_WOA/Global_profile_vs_WOA, diag_timeseries_volume_average_vs_WOA/thetao, diag_surface_maps_no_data/Global_Ocean_surface_map, diag_surface_maps_vs_WOA/Global_Ocean_surface_map, diag_surface_maps_no_data/dfe, diag_transect_vs_WOA/si, diag_profile_vs_WOA/o2, diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries, diag_timeseries_surface_average_vs_WOA/o2, diag_surface_maps_no_data/chl, diag_timeseries_scalars/mfo, diag_surface_maps_vs_WOA/no3, diag_surface_maps_vs_WOA/areacello, diag_timeseries_surface_average_vs_WOA/areacello, diag_profile_vs_WOA/thetao, diag_timeseries_volume_average_no_obs/dfe, diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries, diag_timeseries_volume_average_vs_WOA/no3, diag_profile_no_obs/dfe, diag_timeseries_volume_average_no_obs/chl, diag_transect_no_data/chl, diag_timeseries_volume_average_vs_WOA/si, diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries, diag_timeseries_surface_average_no_obs/chl, diag_timeseries_volume_average_vs_WOA/o2, diag_transect_vs_WOA/o2, diag_transect_no_data/Transects_no_data, diag_transect_vs_WOA/Transects_vs_WOA, diag_profile_no_obs/chl, diag_timeseries_surface_average_vs_WOA/no3, diag_transect_vs_WOA/thetao, diag_transect_vs_WOA/so, diag_profile_vs_WOA/so, diag_surface_maps_no_data/areacello, diag_timeseries_surface_average_no_obs/intpp, diag_surface_maps_vs_WOA/o2, diag_timeseries_surface_average_no_obs/talk, diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs, diag_profile_vs_WOA/no3, diag_timeseries_surface_average_no_obs/areacello, diag_surface_maps_vs_WOA/thetao, diag_profile_vs_WOA/si, diag_transect_vs_WOA/no3, diag_surface_maps_vs_WOA/si, diag_surface_maps_vs_WOA/so, diag_timeseries_surface_average_vs_WOA/thetao 2023-05-11 19:51:29,814 UTC [3254392] DEBUG esmvalcore._main:120 Recipe summary: DiagnosticTask: diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_surface_average_vs_WOA/thetao order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/so order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/no3 order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/o2 order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/si order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_scalars/Scalar_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries', 'script': 'Scalar_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_scalars/Scalar_timeseries'} ancestors: PreprocessingTask: diag_timeseries_scalars/mfo order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs script: ocean/diagnostic_model_vs_obs.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs', 'script': 'Global_Ocean_model_vs_obs', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/thetao order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries', 'script': 'Global_Volume_verage_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries'} ancestors: PreprocessingTask: diag_timeseries_volume_average_no_obs/chl order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_no_obs/dfe order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_no_obs/talk order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None DiagnosticTask: diag_transect_no_data/Transects_no_data script: ocean/diagnostic_transects.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_transect_no_data/Transects_no_data', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data', 'script': 'Transects_no_data', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_transect_no_data/Transects_no_data'} ancestors: PreprocessingTask: diag_transect_no_data/chl order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_no_data/dfe order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_transect_vs_WOA/Transects_vs_WOA script: ocean/diagnostic_transects.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_transect_vs_WOA/Transects_vs_WOA', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA', 'script': 'Transects_vs_WOA', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_transect_vs_WOA/Transects_vs_WOA'} ancestors: PreprocessingTask: diag_transect_vs_WOA/thetao order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/so order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/no3 order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/si order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/o2 order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None DiagnosticTask: diag_profile_no_obs/Global_profile_no_obs script: ocean/diagnostic_profiles.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_no_obs/Global_profile_no_obs', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs', 'script': 'Global_profile_no_obs', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_profile_no_obs/Global_profile_no_obs'} ancestors: PreprocessingTask: diag_profile_no_obs/chl order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_no_obs/dfe order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_no_obs/talk order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_profile_vs_WOA/Global_profile_vs_WOA script: ocean/diagnostic_profiles.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_vs_WOA/Global_profile_vs_WOA', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA', 'script': 'Global_profile_vs_WOA', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_profile_vs_WOA/Global_profile_vs_WOA'} ancestors: PreprocessingTask: diag_profile_vs_WOA/thetao order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/so order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/no3 order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/o2 order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/si order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_volume_average_vs_WOA/thetao order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/no3 order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/o2 order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/si order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None DiagnosticTask: diag_surface_maps_no_data/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_no_data/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_no_data/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_no_data/intpp order: ['load', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/fgco2 order: ['load', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/chl order: ['load', 'extract_levels', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/dfe order: ['load', 'extract_levels', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_surface_average_no_obs/talk order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/intpp order: ['load', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/chl order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/thetao order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None 2023-05-11 19:51:29,880 UTC [3254392] INFO esmvalcore._recipe.recipe:1344 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/recipe_ocean_bgc_filled.yml 2023-05-11 19:51:29,880 UTC [3254392] INFO esmvalcore._task:746 Running 56 tasks using 8 processes 2023-05-11 19:51:29,942 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/thetao in process [3254536] 2023-05-11 19:51:29,942 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/no3 in process [3254537] 2023-05-11 19:51:29,942 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/o2 in process [3254538] 2023-05-11 19:51:29,943 UTC [3254539] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/si in process [3254539] 2023-05-11 19:51:29,943 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/chl in process [3254540] 2023-05-11 19:51:29,943 UTC [3254541] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/dfe in process [3254541] 2023-05-11 19:51:29,944 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/talk in process [3254542] 2023-05-11 19:51:29,944 UTC [3254543] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/talk in process [3254543] 2023-05-11 19:51:29,950 UTC [3254543] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:29,950 UTC [3254543] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:29,951 UTC [3254543] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:29,951 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:29,952 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:29,953 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:29,953 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:29,954 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,029 UTC [3254536] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,029 UTC [3254540] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,029 UTC [3254542] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,029 UTC [3254541] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,029 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:30,029 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:30,029 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:30,030 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,029 UTC [3254541] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:30,030 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,030 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,030 UTC [3254541] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,030 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,030 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,030 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,030 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,031 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,031 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,031 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,031 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:30,031 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:30,032 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,032 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,032 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:30,032 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,032 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,032 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,032 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,032 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,032 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,032 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,032 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,032 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,038 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 48 tasks waiting for ancestors, 0/56 done 2023-05-11 19:51:30,040 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,040 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,042 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,043 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:30,043 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,044 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,044 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,044 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,045 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,045 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,045 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,045 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:30,050 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,052 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,052 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,053 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:30,055 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,056 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,065 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,067 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,067 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,068 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:30,069 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,069 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,069 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,070 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,070 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,072 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,072 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:30,073 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,073 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,074 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,075 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,075 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,075 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,075 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:30,078 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,078 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,079 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,079 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,080 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,081 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,081 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,082 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,082 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,083 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:30,084 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,084 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,085 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,085 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,086 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:30,086 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,086 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,086 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,087 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:30,088 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,088 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,089 UTC [3254543] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 19:51:30,089 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:30,089 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,093 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:30,093 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,093 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:30,094 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,095 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:30,095 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,095 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:30,095 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,096 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,097 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:30,097 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,097 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,098 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,098 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,098 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,107 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,107 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,108 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:30,108 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,109 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,109 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,110 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:30,110 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,111 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,111 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,112 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,112 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,112 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,113 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,113 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,113 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:30,114 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,114 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,114 UTC [3254539] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 19:51:30,115 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,114 UTC [3254539] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:30,115 UTC [3254539] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,116 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,116 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,116 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,116 UTC [3254542] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of talk. 2023-05-11 19:51:30,116 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,116 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,117 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:30,118 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,118 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,118 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,118 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,118 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,118 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:30,119 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:30,120 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,120 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:30,121 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,120 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:30,121 UTC [3254536] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:30,124 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,126 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,126 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,125 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:30,127 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:30,128 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,127 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:30,126 UTC [3254536] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:30,128 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,129 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,129 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:30,128 UTC [3254536] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:30,130 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,130 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,131 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:30,131 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:30,132 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,132 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:30,133 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:30,133 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,134 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,135 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,135 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,136 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,136 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:30,136 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,137 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,137 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,137 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,137 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,137 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,137 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,137 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,138 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,138 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:30,138 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,138 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:30,139 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,139 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,139 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,139 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,140 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:30,140 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,140 UTC [3254538] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 19:51:30,140 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,140 UTC [3254538] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 19:51:30,141 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,141 UTC [3254538] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 19:51:30,141 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,141 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:30,141 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,141 UTC [3254536] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 19:51:30,142 UTC [3254536] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 19:51:30,142 UTC [3254536] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 19:51:30,146 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,146 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,145 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:30,148 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,149 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,151 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,151 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,152 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,150 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:30,153 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,153 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,154 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,152 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:30,154 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,155 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,155 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,155 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:30,157 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,157 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,157 UTC [3254540] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of chl. 2023-05-11 19:51:30,157 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,157 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:30,163 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,163 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,163 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,164 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:30,164 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,165 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:30,165 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,166 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,166 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,166 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,167 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,167 UTC [3254537] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 19:51:30,167 UTC [3254537] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 19:51:30,168 UTC [3254537] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 19:51:30,169 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,170 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,170 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,171 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:30,172 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,173 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,178 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,179 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,179 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,180 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:30,180 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,181 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,181 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,181 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,181 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,189 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,189 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,191 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,191 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,193 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,193 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,193 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,194 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,195 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,195 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,196 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,196 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,198 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,198 UTC [3254539] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of si. 2023-05-11 19:51:30,198 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,418 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:30,426 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,426 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,429 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,432 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,435 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,435 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,436 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:30,437 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,438 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,443 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,444 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,445 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,445 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:30,446 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,446 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,446 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,446 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,446 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,455 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,456 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,457 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,458 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,459 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,459 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,460 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,460 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,461 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,461 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,462 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,462 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,464 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,465 UTC [3254541] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of dfe. 2023-05-11 19:51:30,465 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,498 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,548 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,560 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,710 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:30,711 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 19:51:30,712 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:30,776 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:30,776 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,777 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,777 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,778 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,778 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,778 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,802 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:30,804 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 19:51:30,804 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:30,805 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:30,807 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 19:51:30,807 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:30,874 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:30,875 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,876 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,876 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:30,876 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:30,876 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:30,877 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,877 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,877 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,878 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,878 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:30,878 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,879 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,879 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,900 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:30,900 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,900 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:30,900 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,902 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:30,903 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,906 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,906 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,907 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:30,907 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,908 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:30,908 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,908 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:30,909 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:30,909 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,910 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:30,910 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,911 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:30,914 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,915 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,915 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:30,915 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,916 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:30,916 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,916 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:30,917 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,917 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:30,917 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,917 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,917 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,917 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,917 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:30,918 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,918 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:30,918 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:30,918 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,928 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,928 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,928 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:30,928 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:30,930 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,930 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,930 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,931 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:30,932 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,932 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,932 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:30,932 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:30,933 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,933 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,933 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,933 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:30,934 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,934 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,934 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:30,934 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:30,935 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,935 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,935 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:30,936 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:30,937 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:30,937 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,937 UTC [3254536] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of thetao. 2023-05-11 19:51:30,937 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:30,937 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:30,938 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of o2. 2023-05-11 19:51:30,938 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:31,014 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,029 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,149 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:31,149 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,151 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,154 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,156 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:31,156 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,157 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:31,158 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,158 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:31,162 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,163 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,163 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,164 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:31,164 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,164 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,165 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,165 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,165 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,173 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,173 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,175 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,176 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,177 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,177 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,178 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:31,178 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,179 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,179 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,180 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 19:51:31,180 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,182 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,182 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of no3. 2023-05-11 19:51:31,182 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:31,246 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,248 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 19:51:31,249 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:31,256 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,259 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 19:51:31,260 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,259 UTC [3254539] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:31,292 UTC [3254543] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 19:51:31,292 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:31,305 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,315 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/talk (priority 8) in 0:00:01.370746 2023-05-11 19:51:31,324 UTC [3254539] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:31,324 UTC [3254539] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,325 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,325 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,325 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,325 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,326 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,326 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:31,341 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:31,341 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,341 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:31,351 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,354 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 19:51:31,354 UTC [3254543] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:31,355 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:31,355 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,358 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,360 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,363 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:31,366 UTC [3254539] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:31,370 UTC [3254539] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:31,372 UTC [3254539] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:31,374 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,375 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:31,375 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,376 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:31,379 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,380 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,380 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,380 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,381 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:31,381 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,382 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,382 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 19:51:31,382 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 19:51:31,383 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,383 UTC [3254539] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 19:51:31,383 UTC [3254539] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 19:51:31,382 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:31,383 UTC [3254539] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 19:51:31,429 UTC [3254543] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/talk (priority 10) in 0:00:01.483926 2023-05-11 19:51:31,441 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 48 tasks waiting for ancestors, 1/56 done 2023-05-11 19:51:31,444 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/intpp in process [3254542] 2023-05-11 19:51:31,453 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/chl (priority 6) in 0:00:01.509746 2023-05-11 19:51:31,483 UTC [3254542] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics'] 2023-05-11 19:51:31,484 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:31,484 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,484 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,485 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/intpp_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,485 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,485 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,485 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:31,500 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:31,501 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,502 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,515 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,517 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 19:51:31,517 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,517 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 19:51:31,520 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,520 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:31,525 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,526 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,526 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,527 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 19:51:31,527 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,528 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,528 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,528 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,528 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,534 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,535 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,536 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,536 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,537 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,537 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,538 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,539 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,539 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,540 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,540 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,541 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,542 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 47 tasks waiting for ancestors, 2/56 done 2023-05-11 19:51:31,542 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,543 UTC [3254542] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of intpp. 2023-05-11 19:51:31,543 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:31,544 UTC [3254543] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/chl in process [3254543] 2023-05-11 19:51:31,552 UTC [3254543] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:31,552 UTC [3254543] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:31,553 UTC [3254543] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,553 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,554 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,554 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,554 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,554 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:31,557 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,575 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:31,576 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,579 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,583 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,585 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:31,585 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,587 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:31,588 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,589 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:31,590 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,592 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc') 2023-05-11 19:51:31,592 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:31,595 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,597 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,598 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,599 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:31,600 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,600 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,601 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,601 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,601 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,611 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,611 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,612 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,613 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,613 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,613 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,614 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,614 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,615 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,615 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,616 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,616 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,617 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,618 UTC [3254543] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 19:51:31,618 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:31,631 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:31,635 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,638 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 19:51:31,638 UTC [3254541] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:31,643 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 46 tasks waiting for ancestors, 3/56 done 2023-05-11 19:51:31,645 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/areacello in process [3254540] 2023-05-11 19:51:31,648 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,648 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,649 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,649 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,650 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,650 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,650 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,650 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 19:51:31,650 UTC [3254539] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:31,658 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,658 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,659 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,660 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,661 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,661 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,662 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,662 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,663 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,663 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,664 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,664 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,665 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,665 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,666 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 19:51:31,666 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:31,669 UTC [3254539] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/si (priority 4) in 0:00:01.725648 2023-05-11 19:51:31,687 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/areacello (priority 13) in 0:00:00.042510 2023-05-11 19:51:31,705 UTC [3254541] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/dfe (priority 7) in 0:00:01.760891 2023-05-11 19:51:31,729 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/intpp (priority 11) in 0:00:00.284947 2023-05-11 19:51:31,743 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 45 tasks waiting for ancestors, 3/56 done 2023-05-11 19:51:31,773 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,775 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 19:51:31,776 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:31,796 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/o2 (priority 3) in 0:00:01.853030 2023-05-11 19:51:31,844 UTC [3254392] INFO esmvalcore._task:778 Progress: 4 tasks running, 45 tasks waiting for ancestors, 7/56 done 2023-05-11 19:51:31,850 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/thetao in process [3254540] 2023-05-11 19:51:31,851 UTC [3254541] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/so in process [3254541] 2023-05-11 19:51:31,851 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/no3 in process [3254542] 2023-05-11 19:51:31,855 UTC [3254539] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries in process [3254539] 2023-05-11 19:51:31,858 UTC [3254539] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/settings.yml'] 2023-05-11 19:51:31,858 UTC [3254539] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:31,858 UTC [3254539] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 19:51:31,858 UTC [3254539] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 19:51:31,858 UTC [3254539] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 19:51:31,858 UTC [3254539] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/log.txt 2023-05-11 19:51:31,858 UTC [3254539] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/settings.yml 2023-05-11 19:51:31,864 UTC [3254540] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:31,864 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:31,865 UTC [3254542] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:31,865 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:31,865 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,865 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,865 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,865 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,865 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,866 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,866 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,866 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,866 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,866 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,866 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:31,866 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:31,880 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:31,880 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,882 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:31,882 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,882 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,883 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,885 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,886 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:31,886 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,887 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,887 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:31,888 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,888 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:31,888 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,889 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:31,889 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:31,890 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,891 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:31,892 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,893 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:31,893 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,894 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:31,894 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,895 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,894 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,895 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,895 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,895 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,895 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:31,896 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,897 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:31,897 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,897 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,897 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,898 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,898 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,901 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,901 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,902 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,902 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,903 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,903 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,904 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,904 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:31,904 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,904 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,905 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,905 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,905 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,906 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,906 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,906 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,906 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:31,906 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,907 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,907 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,907 UTC [3254542] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 19:51:31,908 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:31,908 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,909 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:31,909 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,910 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:31,910 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,909 UTC [3254541] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:31,910 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,910 UTC [3254541] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:31,910 UTC [3254541] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,911 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,911 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:31,912 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:31,912 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,912 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,912 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,912 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 19:51:31,912 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,912 UTC [3254540] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 19:51:31,912 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:31,912 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:31,926 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:31,928 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,928 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,928 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,937 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/no3 (priority 2) in 0:00:01.994871 2023-05-11 19:51:31,938 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:31,942 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,943 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:31,945 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:31,946 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 41 tasks waiting for ancestors, 8/56 done 2023-05-11 19:51:31,947 UTC [3254541] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,948 UTC [3254541] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:31,948 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:31,949 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/o2 in process [3254538] 2023-05-11 19:51:31,950 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:31,954 UTC [3254541] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:31,959 UTC [3254541] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:31,961 UTC [3254541] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:31,963 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:31,964 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:31,965 UTC [3254541] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 19:51:31,965 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:31,965 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:31,966 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:31,966 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:31,966 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:31,966 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:31,966 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,967 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:31,967 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:31,967 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,967 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:31,969 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:31,970 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:31,971 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:31,972 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:31,972 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:31,973 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:31,973 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:31,974 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:31,976 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:31,977 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:31,978 UTC [3254541] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_salinity / (1.0) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:31,978 UTC [3254541] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:31,980 UTC [3254541] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_salinity / (1.0) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:31,981 UTC [3254541] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 19:51:31,985 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:31,985 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:31,985 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:31,992 UTC [3254541] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:31,993 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:31,994 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 19:51:31,994 UTC [3254541] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:32,000 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:32,000 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,003 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,006 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,009 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:32,047 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 40 tasks waiting for ancestors, 9/56 done 2023-05-11 19:51:32,011 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:32,066 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/si in process [3254537] 2023-05-11 19:51:32,067 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:32,069 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:32,071 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,072 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:32,073 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:32,074 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:32,077 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,078 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,078 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,079 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:32,079 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:32,080 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:32,080 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:32,081 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:32,084 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:32,084 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:32,085 UTC [3254538] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:32,085 UTC [3254538] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:32,085 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 19:51:32,086 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:32,086 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:32,086 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,086 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,087 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,087 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,087 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,087 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:32,087 UTC [3254538] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:32,088 UTC [3254538] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 19:51:32,099 UTC [3254538] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:32,100 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:32,102 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 19:51:32,102 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:32,104 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:32,104 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,104 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:32,117 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:32,117 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,120 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,122 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,124 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:32,125 UTC [3254541] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:32,125 UTC [3254541] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:32,126 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,126 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:32,126 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,126 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,126 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:32,127 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:32,131 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:32,133 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:32,135 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,136 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:32,137 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:32,137 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:32,140 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,140 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:32,140 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,141 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:32,141 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,142 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:32,142 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:32,142 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:32,143 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:32,143 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:32,144 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:32,145 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,146 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:32,147 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:32,147 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:32,147 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,148 UTC [3254537] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:32,148 UTC [3254537] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:32,148 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:32,149 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:32,150 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:32,149 UTC [3254537] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:32,150 UTC [3254537] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 19:51:32,153 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,153 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:32,153 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:32,153 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:32,154 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,154 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,154 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,154 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,154 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,154 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,155 UTC [3254541] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,160 UTC [3254537] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:32,160 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:32,161 UTC [3254541] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,161 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,162 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 19:51:32,162 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,162 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,162 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:32,163 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:32,163 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,164 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,164 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,164 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 39 tasks waiting for ancestors, 9/56 done 2023-05-11 19:51:32,165 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,165 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,166 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,166 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:32,167 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:32,167 UTC [3254541] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 19:51:32,167 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:32,168 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:32,168 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,170 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,172 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,174 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:32,174 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,175 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:32,176 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:32,176 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:32,179 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,180 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,180 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:32,181 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,181 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:32,182 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,182 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,182 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,182 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,182 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,188 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,188 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,189 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,189 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,190 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:32,190 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,191 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,191 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,192 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,192 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,193 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,193 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:32,194 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:32,194 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 19:51:32,194 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:32,202 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:32,202 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:32,202 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,202 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,203 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,203 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,203 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:32,207 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:32,217 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:32,218 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,220 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,269 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,271 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:32,271 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,272 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:32,273 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:32,273 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:32,276 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,277 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:32,278 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,278 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:32,279 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:32,279 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,279 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:32,279 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:32,279 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,285 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:32,285 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:32,286 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,287 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:32,287 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:32,288 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:32,288 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,289 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:32,289 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:32,289 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:32,290 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:32,290 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:32,292 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:32,292 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 19:51:32,292 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:32,305 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:32,416 UTC [3254543] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 19:51:32,416 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:32,427 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:32,461 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:32,463 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 19:51:32,463 UTC [3254543] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:32,482 UTC [3254543] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/chl (priority 12) in 0:00:00.937671 2023-05-11 19:51:32,665 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 39 tasks waiting for ancestors, 10/56 done 2023-05-11 19:51:32,677 UTC [3254543] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries in process [3254543] 2023-05-11 19:51:32,680 UTC [3254543] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 19:51:32,680 UTC [3254543] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:32,680 UTC [3254543] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 19:51:32,680 UTC [3254543] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 19:51:32,680 UTC [3254543] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 19:51:32,680 UTC [3254543] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/log.txt 2023-05-11 19:51:32,681 UTC [3254543] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/settings.yml 2023-05-11 19:51:32,766 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 38 tasks waiting for ancestors, 10/56 done 2023-05-11 19:51:33,010 UTC [3254542] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 19:51:33,011 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,028 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,070 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,073 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 19:51:33,073 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:33,099 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:33,099 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,099 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,100 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:33,101 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:33,101 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,101 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,102 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:33,126 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:33,126 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,126 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:33,146 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:33,146 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,149 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:33,153 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,156 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:33,160 UTC [3254542] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:33,166 UTC [3254542] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:33,168 UTC [3254542] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:33,170 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,171 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:33,172 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:33,173 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:33,177 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,178 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:33,178 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,179 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:33,179 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,180 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,180 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:33,181 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:33,183 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,184 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,184 UTC [3254542] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:33,185 UTC [3254542] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:33,186 UTC [3254542] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:33,187 UTC [3254542] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 19:51:33,197 UTC [3254542] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:33,198 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,198 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 19:51:33,199 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,200 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 19:51:33,200 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:33,207 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 19:51:33,207 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,210 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,218 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,243 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,243 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/no3 (priority 17) in 0:00:01.391901 2023-05-11 19:51:33,244 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 19:51:33,244 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:33,253 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,254 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 19:51:33,254 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:33,265 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/si (priority 19) in 0:00:01.198730 2023-05-11 19:51:33,273 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/o2 (priority 18) in 0:00:01.323938 2023-05-11 19:51:33,369 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 38 tasks waiting for ancestors, 12/56 done 2023-05-11 19:51:33,371 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/areacello in process [3254542] 2023-05-11 19:51:33,371 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_timeseries_scalars/mfo in process [3254537] 2023-05-11 19:51:33,374 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,374 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,374 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,375 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,375 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/mfo_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,375 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,375 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,375 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 19:51:33,375 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,375 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,375 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,375 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,380 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 19:51:33,380 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,381 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,381 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,382 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,382 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,383 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,383 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:33,383 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,384 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,384 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,385 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,385 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,386 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,386 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,387 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,387 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,387 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 19:51:33,388 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:33,405 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/areacello (priority 20) in 0:00:00.033838 2023-05-11 19:51:33,418 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,420 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) 2023-05-11 19:51:33,420 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,420 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'mfo' 2023-05-11 19:51:33,425 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:33,426 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:33,434 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,435 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,435 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,436 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'mfo' 2023-05-11 19:51:33,436 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,437 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,437 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,438 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc') 2023-05-11 19:51:33,438 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc 2023-05-11 19:51:33,447 UTC [3254537] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/fileformats/netcdf/saver.py:2481: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison contains_value = fill_value is not None and fill_value in data 2023-05-11 19:51:33,456 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_scalars/mfo (priority 22) in 0:00:00.084762 2023-05-11 19:51:33,469 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 36 tasks waiting for ancestors, 13/56 done 2023-05-11 19:51:33,471 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/thetao in process [3254538] 2023-05-11 19:51:33,484 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:33,484 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:33,484 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,484 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,484 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:33,485 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:33,485 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,485 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,485 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:33,498 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:33,499 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,499 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:33,511 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:33,511 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,514 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:33,516 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,518 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:33,520 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:33,525 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:33,527 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:33,528 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,529 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:33,530 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:33,530 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:33,533 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,534 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:33,534 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,535 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:33,535 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,536 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,536 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,537 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,537 UTC [3254538] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:33,537 UTC [3254538] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:33,538 UTC [3254538] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:33,539 UTC [3254538] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 19:51:33,560 UTC [3254538] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:33,561 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:33,561 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,570 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 35 tasks waiting for ancestors, 15/56 done 2023-05-11 19:51:33,571 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,572 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 19:51:33,572 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:33,573 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/so in process [3254537] 2023-05-11 19:51:33,573 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_timeseries_scalars/Scalar_timeseries in process [3254542] 2023-05-11 19:51:33,575 UTC [3254542] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries/settings.yml'] 2023-05-11 19:51:33,575 UTC [3254542] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:33,575 UTC [3254542] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 19:51:33,575 UTC [3254542] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 19:51:33,575 UTC [3254542] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 19:51:33,576 UTC [3254542] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries/log.txt 2023-05-11 19:51:33,576 UTC [3254542] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries/settings.yml 2023-05-11 19:51:33,586 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:33,586 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:33,586 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,586 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,586 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,587 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,587 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,587 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:33,601 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:33,601 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,603 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,606 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,608 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:33,608 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,609 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:33,610 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:33,610 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:33,613 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,614 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,615 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,615 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:33,616 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,616 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,616 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,616 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,616 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,623 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,623 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,624 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,625 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,626 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:33,626 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,627 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,627 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,628 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,628 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,629 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,629 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,631 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,631 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 19:51:33,631 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,651 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,670 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 33 tasks waiting for ancestors, 15/56 done 2023-05-11 19:51:33,671 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:33,671 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:33,671 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,672 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,672 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,672 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,672 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:33,690 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:33,690 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,692 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,695 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:33,697 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,697 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,699 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:33,699 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,700 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:33,702 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:33,703 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:33,707 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,708 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:33,709 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,710 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:33,711 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:33,711 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,711 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:33,711 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:33,711 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,768 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:33,768 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:33,769 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,769 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:33,770 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:33,770 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:33,771 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,771 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:33,772 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:33,772 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:33,773 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:33,773 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:33,774 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:33,774 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 19:51:33,774 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:33,775 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,776 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 19:51:33,777 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:33,787 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,830 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:33,831 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:33,854 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:33,855 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 19:51:33,855 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:34,915 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:34,915 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:34,916 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:34,916 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:34,917 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:34,917 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:34,917 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:34,917 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,936 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,936 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:34,936 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,955 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,955 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:34,958 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:34,960 UTC [3254537] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,961 UTC [3254537] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:34,961 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:34,963 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:34,965 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:34,970 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:34,972 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:34,973 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:34,974 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:34,975 UTC [3254537] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 19:51:34,975 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:34,976 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:34,979 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:34,980 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:34,981 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:34,982 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:34,982 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:34,983 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:34,983 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:34,983 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:34,984 UTC [3254537] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_salinity / (1.0) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:34,984 UTC [3254537] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:34,985 UTC [3254537] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_salinity / (1.0) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:34,986 UTC [3254537] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 19:51:35,007 UTC [3254537] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:35,008 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:35,008 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,010 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/thetao (priority 24) in 0:00:01.538888 2023-05-11 19:51:35,018 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:35,019 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 19:51:35,019 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:35,134 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/so (priority 25) in 0:00:01.561338 2023-05-11 19:51:35,174 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 33 tasks waiting for ancestors, 16/56 done 2023-05-11 19:51:35,176 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/no3 in process [3254538] 2023-05-11 19:51:35,188 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:35,188 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:35,188 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,188 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,189 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,189 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,189 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,189 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,274 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 32 tasks waiting for ancestors, 17/56 done 2023-05-11 19:51:35,276 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/o2 in process [3254537] 2023-05-11 19:51:35,290 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:35,290 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:35,290 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,290 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,290 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,291 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,291 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,291 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,291 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:35,304 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:35,304 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,304 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:35,306 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,306 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,308 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,311 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,312 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:35,312 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,313 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:35,314 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:35,315 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:35,317 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:35,317 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,317 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,318 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,319 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,319 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,319 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:35,320 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,320 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,320 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,320 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,320 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:35,321 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,324 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:35,325 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:35,326 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,326 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,327 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,328 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:35,328 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,326 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:35,328 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:35,329 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,329 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,329 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,330 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:35,330 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:35,332 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:35,332 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 19:51:35,332 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:35,330 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:35,332 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:35,333 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,334 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:35,335 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:35,336 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:35,339 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,339 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,340 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,340 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:35,341 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:35,341 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:35,341 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:35,342 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,343 UTC [3254537] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:35,343 UTC [3254537] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:35,345 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,344 UTC [3254537] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:35,345 UTC [3254537] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 19:51:35,365 UTC [3254537] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:35,366 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:35,367 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,374 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 31 tasks waiting for ancestors, 17/56 done 2023-05-11 19:51:35,377 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:35,378 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:35,379 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 19:51:35,379 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,379 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:35,397 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:35,398 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 19:51:35,399 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:35,463 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:35,463 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,463 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,463 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,464 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,464 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,464 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,476 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,477 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,478 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,481 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,483 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:35,483 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,484 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:35,485 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:35,486 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:35,489 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,490 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,490 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,491 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:35,492 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,492 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,492 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,492 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,492 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:35,498 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:35,498 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,499 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,500 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,501 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:35,501 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,502 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:35,502 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,503 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:35,503 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,504 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:35,504 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:35,505 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:35,505 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 19:51:35,506 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:35,520 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,556 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:35,557 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,576 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:35,578 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 19:51:35,578 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:35,591 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:35,591 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,592 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,592 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,592 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,592 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,593 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,593 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:35,605 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:35,605 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,605 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:35,618 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:35,618 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,620 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,622 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:35,625 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:35,627 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:35,631 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:35,633 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:35,635 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:35,635 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:35,636 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:35,637 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:35,640 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:35,641 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,641 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:35,642 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:35,642 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:35,643 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:35,643 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:35,643 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,644 UTC [3254538] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:35,644 UTC [3254538] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:35,645 UTC [3254538] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:35,646 UTC [3254538] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 19:51:35,669 UTC [3254538] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:35,670 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:35,671 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:35,680 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:35,682 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 19:51:35,682 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:35,789 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/no3 (priority 26) in 0:00:00.613176 2023-05-11 19:51:35,802 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/o2 (priority 27) in 0:00:00.526022 2023-05-11 19:51:35,976 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 31 tasks waiting for ancestors, 19/56 done 2023-05-11 19:51:35,978 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/si in process [3254538] 2023-05-11 19:51:35,978 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/chl in process [3254537] 2023-05-11 19:51:35,983 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:35,983 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:35,983 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,983 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,983 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:35,984 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,984 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,984 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,991 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:35,991 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:35,991 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:35,991 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:35,992 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,992 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:35,992 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:35,992 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:35,992 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:35,996 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:35,996 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:35,998 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,001 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,002 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:36,002 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,003 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:36,004 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:36,005 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:36,007 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:36,007 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,007 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:36,008 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,009 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,009 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,010 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:36,011 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:36,011 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,011 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:36,011 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,011 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,017 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,017 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,018 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,018 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,019 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:36,019 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,020 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,020 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,021 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,021 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,022 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:36,022 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,022 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,022 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:36,023 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:36,023 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 19:51:36,024 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:36,024 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:36,027 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,029 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:36,031 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:36,037 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,036 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:36,038 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:36,039 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,040 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:36,041 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:36,041 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:36,044 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,045 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:36,046 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,046 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:36,047 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:36,047 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:36,047 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:36,048 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,049 UTC [3254538] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:36,049 UTC [3254538] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:36,050 UTC [3254538] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:36,051 UTC [3254538] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 19:51:36,072 UTC [3254538] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:36,072 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:36,072 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:36,073 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,073 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,076 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 29 tasks waiting for ancestors, 19/56 done 2023-05-11 19:51:36,083 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:36,084 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 19:51:36,085 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:36,091 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:36,093 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 19:51:36,093 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:36,172 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:36,172 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:36,172 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:36,172 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,173 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:36,173 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,173 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:36,190 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:36,190 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,192 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,195 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,197 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:36,197 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,198 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:36,199 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:36,200 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:36,203 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,204 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,204 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,205 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:36,206 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:36,206 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,206 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:36,206 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,206 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,213 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,214 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,215 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,215 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,216 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:36,216 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,217 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,217 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,218 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,219 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,219 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,220 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:36,221 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:36,221 UTC [3254538] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 19:51:36,221 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:36,235 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,267 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:36,268 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,286 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:36,288 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 19:51:36,288 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:36,294 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/chl (priority 30) in 0:00:00.315855 2023-05-11 19:51:36,473 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/si (priority 28) in 0:00:00.495238 2023-05-11 19:51:36,591 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 29 tasks waiting for ancestors, 20/56 done 2023-05-11 19:51:36,594 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/dfe in process [3254537] 2023-05-11 19:51:36,599 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:36,599 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:36,599 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:36,599 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:36,600 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,600 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:36,600 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,600 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:36,613 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:36,613 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,615 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,618 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,619 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:36,619 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,620 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:36,621 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:36,622 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:36,624 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,625 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:36,626 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,626 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:36,627 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:36,627 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,627 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:36,627 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:36,627 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,633 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:36,633 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:36,633 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,634 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:36,635 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:36,635 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:36,635 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,636 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:36,636 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:36,637 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:36,637 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:36,637 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:36,639 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:36,639 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of dfe. 2023-05-11 19:51:36,639 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:36,652 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,683 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:36,683 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:36,693 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 28 tasks waiting for ancestors, 21/56 done 2023-05-11 19:51:36,701 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:36,703 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 19:51:36,703 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:36,707 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/Global_profile_vs_WOA in process [3254538] 2023-05-11 19:51:36,710 UTC [3254538] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA/settings.yml'] 2023-05-11 19:51:36,710 UTC [3254538] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:36,711 UTC [3254538] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 19:51:36,711 UTC [3254538] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 19:51:36,711 UTC [3254538] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 19:51:36,711 UTC [3254538] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA/log.txt 2023-05-11 19:51:36,711 UTC [3254538] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA/settings.yml 2023-05-11 19:51:36,793 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 27 tasks waiting for ancestors, 21/56 done 2023-05-11 19:51:36,944 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/dfe (priority 31) in 0:00:00.349784 2023-05-11 19:51:37,094 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 27 tasks waiting for ancestors, 22/56 done 2023-05-11 19:51:37,096 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/talk in process [3254537] 2023-05-11 19:51:37,101 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 19:51:37,101 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:37,101 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:37,101 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:37,102 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:37,102 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:37,102 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:37,102 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:37,114 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:37,114 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:37,116 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:37,119 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:37,120 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:37,120 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:37,121 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:37,122 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:37,123 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:37,125 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:37,126 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:37,127 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:37,127 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 19:51:37,128 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:37,128 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:37,128 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:37,128 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:37,128 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:37,133 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:37,134 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:37,134 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:37,135 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:37,136 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:37,136 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:37,136 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:37,137 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:37,137 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:37,138 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:37,138 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:37,138 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:37,140 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:37,140 UTC [3254537] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 19:51:37,140 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:37,152 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:37,185 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 19:51:37,185 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:37,194 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 26 tasks waiting for ancestors, 22/56 done 2023-05-11 19:51:37,203 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:37,204 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 19:51:37,205 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:37,259 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:37,261 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 19:51:37,261 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:37,284 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/thetao (priority 1) in 0:00:07.341888 2023-05-11 19:51:37,395 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 26 tasks waiting for ancestors, 23/56 done 2023-05-11 19:51:37,403 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/talk (priority 32) in 0:00:00.307281 2023-05-11 19:51:37,409 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries in process [3254536] 2023-05-11 19:51:37,412 UTC [3254536] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 19:51:37,412 UTC [3254536] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:37,412 UTC [3254536] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:37,412 UTC [3254536] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:37,412 UTC [3254536] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:37,412 UTC [3254536] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/log.txt 2023-05-11 19:51:37,413 UTC [3254536] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml 2023-05-11 19:51:37,495 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 25 tasks waiting for ancestors, 23/56 done 2023-05-11 19:51:37,596 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 25 tasks waiting for ancestors, 24/56 done 2023-05-11 19:51:37,604 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/Global_profile_no_obs in process [3254537] 2023-05-11 19:51:37,607 UTC [3254537] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs/settings.yml'] 2023-05-11 19:51:37,607 UTC [3254537] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:37,607 UTC [3254537] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:37,607 UTC [3254537] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:37,607 UTC [3254537] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:37,607 UTC [3254537] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs/log.txt 2023-05-11 19:51:37,607 UTC [3254537] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs/settings.yml 2023-05-11 19:51:37,696 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 24 tasks waiting for ancestors, 24/56 done 2023-05-11 19:51:37,879 UTC [3254539] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 19:51:37,880 UTC [3254539] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:37,880 UTC [3254539] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 19:51:37,881 UTC [3254539] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diagnostic_provenance.yml 2023-05-11 19:51:37,906 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:37,906 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:37,906 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:37,906 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30814 2023-05-11 19:51:37,972 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:37,972 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:37,972 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:37,972 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30851 2023-05-11 19:51:38,036 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,036 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,037 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,037 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27637 2023-05-11 19:51:38,093 UTC [3254539] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,097 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,098 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,098 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,098 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30175 2023-05-11 19:51:38,132 UTC [3254539] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,136 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,136 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,136 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,136 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 31115 2023-05-11 19:51:38,171 UTC [3254539] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,176 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,176 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,176 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,176 UTC [3254539] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27740 2023-05-11 19:51:38,211 UTC [3254539] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries took 0.3 seconds 2023-05-11 19:51:38,211 UTC [3254539] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries (priority 5) in 0:00:06.355930 2023-05-11 19:51:38,397 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 24 tasks waiting for ancestors, 25/56 done 2023-05-11 19:51:38,400 UTC [3254539] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/thetao in process [3254539] 2023-05-11 19:51:38,411 UTC [3254539] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 19:51:38,411 UTC [3254539] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:38,412 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:38,426 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:38,426 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:38,428 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:38,431 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:38,432 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:38,432 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:38,433 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:38,434 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:38,435 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:38,438 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:38,439 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:38,439 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:38,440 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:38,440 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:38,441 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:38,441 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:38,442 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:38,498 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 23 tasks waiting for ancestors, 25/56 done 2023-05-11 19:51:38,702 UTC [3254543] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.4 GB 2023-05-11 19:51:38,702 UTC [3254543] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:38,703 UTC [3254543] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 19:51:38,703 UTC [3254543] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 19:51:38,727 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,728 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,728 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,728 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28855 2023-05-11 19:51:38,792 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,792 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,792 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,792 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42006 2023-05-11 19:51:38,857 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,857 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,857 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,857 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28416 2023-05-11 19:51:38,914 UTC [3254543] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_prep_global_Surface_average_timeseries_2D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,918 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,918 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,918 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,918 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41656 2023-05-11 19:51:38,953 UTC [3254543] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,957 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,957 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,957 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,958 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27455 2023-05-11 19:51:38,992 UTC [3254543] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:38,996 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:38,996 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:38,996 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:38,996 UTC [3254543] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28636 2023-05-11 19:51:39,030 UTC [3254543] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries took 0.3 seconds 2023-05-11 19:51:39,030 UTC [3254543] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries (priority 9) in 0:00:06.353399 2023-05-11 19:51:39,199 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 23 tasks waiting for ancestors, 26/56 done 2023-05-11 19:51:39,201 UTC [3254543] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/so in process [3254543] 2023-05-11 19:51:39,218 UTC [3254543] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 19:51:39,218 UTC [3254543] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:39,218 UTC [3254543] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:39,219 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:39,219 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:39,220 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:39,220 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:39,220 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:39,220 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,238 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,238 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:39,238 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,254 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,254 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:39,257 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:39,259 UTC [3254543] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,260 UTC [3254543] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:39,261 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:39,263 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:39,268 UTC [3254543] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:39,273 UTC [3254543] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:39,276 UTC [3254543] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:39,278 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:39,279 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:39,280 UTC [3254543] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 19:51:39,280 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:39,281 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:39,284 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:39,285 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:39,287 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:39,288 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:39,288 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:39,289 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:39,289 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:39,290 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:39,293 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:39,294 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:39,299 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:39,300 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 22 tasks waiting for ancestors, 26/56 done 2023-05-11 19:51:39,301 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:39,303 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:39,304 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 19:51:39,305 UTC [3254543] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:39,375 UTC [3254543] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:39,376 UTC [3254543] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:39,389 UTC [3254543] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:39,389 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:39,391 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:39,394 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:39,395 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:39,395 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:39,396 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:39,397 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:39,398 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:39,401 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:39,402 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:39,402 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:39,403 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:39,403 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:39,404 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:39,404 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:39,405 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:42,623 UTC [3254537] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.4 GB 2023-05-11 19:51:42,623 UTC [3254537] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:42,624 UTC [3254537] DEBUG esmvalcore._task:589 Script ocean/diagnostic_profiles.py completed successfully 2023-05-11 19:51:42,624 UTC [3254537] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_no_obs/Global_profile_no_obs/diagnostic_provenance.yml 2023-05-11 19:51:42,631 UTC [3254537] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:42,641 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,641 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,642 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,642 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37262 2023-05-11 19:51:42,677 UTC [3254537] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:42,684 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,684 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,684 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,684 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 35309 2023-05-11 19:51:42,719 UTC [3254537] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 19:51:42,726 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,727 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,727 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,727 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37319 2023-05-11 19:51:42,762 UTC [3254537] WARNING esmvalcore._task:679 Valid ancestor files for diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs are: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 19:51:42,762 UTC [3254537] DEBUG esmvalcore._task:683 Collecting provenance of task diag_profile_no_obs/Global_profile_no_obs took 0.1 seconds 2023-05-11 19:51:42,762 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/Global_profile_no_obs (priority 29) in 0:00:05.157794 2023-05-11 19:51:42,779 UTC [3254538] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.4 GB 2023-05-11 19:51:42,779 UTC [3254538] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:42,780 UTC [3254538] DEBUG esmvalcore._task:589 Script ocean/diagnostic_profiles.py completed successfully 2023-05-11 19:51:42,780 UTC [3254538] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_profile_vs_WOA/Global_profile_vs_WOA/diagnostic_provenance.yml 2023-05-11 19:51:42,807 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,807 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,807 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,807 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37414 2023-05-11 19:51:42,854 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,854 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,854 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,854 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41236 2023-05-11 19:51:42,902 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,903 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,903 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,903 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41587 2023-05-11 19:51:42,904 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 22 tasks waiting for ancestors, 27/56 done 2023-05-11 19:51:42,906 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/no3 in process [3254537] 2023-05-11 19:51:42,918 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 19:51:42,918 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:42,918 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:42,919 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:42,919 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:42,919 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:42,919 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:42,919 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:42,931 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:42,931 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:42,933 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:42,935 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:42,937 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:42,937 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:42,938 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:42,939 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:42,940 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:42,942 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:42,943 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:42,944 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:42,944 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:42,945 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:42,945 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:42,946 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:42,946 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:42,950 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:42,950 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:42,950 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:42,950 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 50077 2023-05-11 19:51:43,000 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:43,000 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:43,000 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:43,000 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 43262 2023-05-11 19:51:43,004 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 21 tasks waiting for ancestors, 27/56 done 2023-05-11 19:51:43,037 UTC [3254538] DEBUG esmvalcore._task:683 Collecting provenance of task diag_profile_vs_WOA/Global_profile_vs_WOA took 0.3 seconds 2023-05-11 19:51:43,038 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/Global_profile_vs_WOA (priority 23) in 0:00:06.330060 2023-05-11 19:51:43,205 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 21 tasks waiting for ancestors, 28/56 done 2023-05-11 19:51:43,207 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/si in process [3254538] 2023-05-11 19:51:43,218 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 19:51:43,218 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:43,218 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:43,218 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:43,219 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,219 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,219 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:43,219 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:43,219 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:43,232 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:43,232 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:43,232 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:43,245 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:43,246 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:43,249 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,252 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:43,254 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:43,257 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:43,261 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:43,263 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:43,265 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:43,265 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:43,266 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:43,267 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:43,270 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:43,271 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,271 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:43,272 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:43,272 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:43,273 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:43,273 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:43,274 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:43,277 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:43,278 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:43,282 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:43,284 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:43,286 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:43,288 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 19:51:43,288 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:43,305 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 20 tasks waiting for ancestors, 28/56 done 2023-05-11 19:51:43,332 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:43,332 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:43,333 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:43,333 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:43,333 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:43,333 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:43,333 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:43,348 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:43,348 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:43,350 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:43,352 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:43,354 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:43,354 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:43,355 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:43,356 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:43,356 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:43,359 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:43,360 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:43,360 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:43,361 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:43,362 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:43,362 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:43,362 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:43,363 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:43,648 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:43,649 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:43,661 UTC [3254537] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:43,662 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:43,663 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:43,675 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:43,678 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 19:51:43,678 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:43,698 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:43,698 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:43,699 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:43,699 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,700 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,700 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:43,700 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:43,700 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:43,718 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:43,719 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:43,719 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:43,737 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:43,737 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:43,740 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,743 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:43,745 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:43,748 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:43,752 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:43,755 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:43,756 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:43,757 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:43,758 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:43,759 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:43,762 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:43,763 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:43,764 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:43,765 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:43,765 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:43,766 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:43,766 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:43,767 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:43,769 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:43,770 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:43,774 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:43,776 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:43,777 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:43,780 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 19:51:43,780 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:43,835 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/no3 (priority 37) in 0:00:00.929128 2023-05-11 19:51:44,006 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 20 tasks waiting for ancestors, 29/56 done 2023-05-11 19:51:44,009 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/o2 in process [3254537] 2023-05-11 19:51:44,019 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 19:51:44,020 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:44,020 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:44,020 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:44,020 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:44,021 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:44,021 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:44,021 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,021 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:44,035 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:44,035 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,035 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:44,048 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:44,048 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:44,051 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:44,053 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:44,055 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:44,057 UTC [3254537] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:44,062 UTC [3254537] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:44,064 UTC [3254537] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:44,065 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:44,066 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:44,067 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:44,068 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:44,070 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:44,071 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:44,071 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:44,072 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:44,073 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:44,073 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:44,073 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:44,074 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:44,076 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:44,077 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:44,081 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:44,083 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:44,084 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,087 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 19:51:44,087 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:44,107 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 19 tasks waiting for ancestors, 29/56 done 2023-05-11 19:51:44,128 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:44,128 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:44,129 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:44,129 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:44,129 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:44,129 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,129 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:44,142 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:44,143 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:44,144 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:44,147 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:44,148 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:44,148 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:44,149 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:44,150 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:44,151 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:44,154 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:44,155 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:44,155 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:44,156 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:44,156 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:44,157 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:44,157 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:44,158 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:44,194 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:44,195 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:44,208 UTC [3254538] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:44,208 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:44,209 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:44,220 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,222 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 19:51:44,222 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:44,242 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/si (priority 38) in 0:00:01.035485 2023-05-11 19:51:44,408 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 19 tasks waiting for ancestors, 30/56 done 2023-05-11 19:51:44,410 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/areacello in process [3254538] 2023-05-11 19:51:44,412 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:44,413 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:44,413 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:44,413 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:44,413 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,413 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:44,419 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:44,419 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:44,420 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:44,420 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:44,421 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:44,421 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:44,422 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:44,422 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:44,423 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:44,423 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:44,424 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:44,424 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:44,424 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:44,425 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,425 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 19:51:44,425 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:44,435 UTC [3254536] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 19:51:44,436 UTC [3254536] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:44,436 UTC [3254536] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 19:51:44,436 UTC [3254536] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 19:51:44,442 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/areacello (priority 40) in 0:00:00.032811 2023-05-11 19:51:44,479 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,479 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,479 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,479 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 22113 2023-05-11 19:51:44,508 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 18 tasks waiting for ancestors, 30/56 done 2023-05-11 19:51:44,540 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,540 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,540 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,540 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 23110 2023-05-11 19:51:44,601 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,601 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,601 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,601 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18944 2023-05-11 19:51:44,608 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 18 tasks waiting for ancestors, 31/56 done 2023-05-11 19:51:44,610 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/intpp in process [3254538] 2023-05-11 19:51:44,613 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics'] 2023-05-11 19:51:44,613 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:44,613 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:44,614 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:44,614 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/intpp_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,614 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:44,614 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,614 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:44,629 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:44,629 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:44,631 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,644 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:44,645 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 19:51:44,645 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:44,646 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 19:51:44,648 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:44,649 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:44,653 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:44,654 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,654 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:44,655 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 19:51:44,655 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:44,656 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:44,656 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:44,657 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:44,661 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,662 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,662 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,662 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,662 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 22936 2023-05-11 19:51:44,663 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc') 2023-05-11 19:51:44,663 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 19:51:44,709 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 17 tasks waiting for ancestors, 31/56 done 2023-05-11 19:51:44,712 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42158 2023-05-11 19:51:44,752 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,757 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,757 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,757 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,757 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32048 2023-05-11 19:51:44,789 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/intpp (priority 42) in 0:00:00.178642 2023-05-11 19:51:44,791 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,796 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,796 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,796 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,796 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30622 2023-05-11 19:51:44,830 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,835 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,835 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,835 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,835 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32343 2023-05-11 19:51:44,870 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_thetao_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,873 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,874 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,874 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,874 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18713 2023-05-11 19:51:44,903 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_no3_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,905 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:44,906 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:44,907 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,907 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,907 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,907 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 17862 2023-05-11 19:51:44,909 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 17 tasks waiting for ancestors, 32/56 done 2023-05-11 19:51:44,911 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/fgco2 in process [3254538] 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics'] 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/fgco2_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:44,915 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:44,919 UTC [3254537] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:44,919 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:44,920 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:44,921 UTC [3254538] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/fileformats/_nc_load_rules/helpers.py:229: UnknownCellMethodWarning: NetCDF variable 'fgco2' contains unknown cell method 'where' warnings.warn(message=msg, category=UnknownCellMethodWarning) 2023-05-11 19:51:44,930 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,931 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:44,931 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:44,933 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 19:51:44,933 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,933 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:44,936 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_o2_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,940 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,940 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,940 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,940 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19912 2023-05-11 19:51:44,946 UTC [3254538] WARNING esmvalcore.cmor.check:261 There were warnings in variable fgco2: fgco2: attribute positive not present loaded from file /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 19:51:44,946 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:44,947 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 19:51:44,947 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:44,948 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'fgco2' 2023-05-11 19:51:44,950 UTC [3254538] WARNING esmvalcore.cmor.check:261 There were warnings in variable fgco2: fgco2: attribute positive not present loaded from file 2023-05-11 19:51:44,950 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:44,951 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:44,953 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/o2 (priority 39) in 0:00:00.944001 2023-05-11 19:51:44,955 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:44,956 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:44,956 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:44,957 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'fgco2' 2023-05-11 19:51:44,957 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:44,958 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:44,958 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:44,959 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:44,962 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:44,964 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc') 2023-05-11 19:51:44,965 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 19:51:44,970 UTC [3254536] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_si_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:44,974 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:44,974 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:44,974 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:44,974 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15924 2023-05-11 19:51:45,003 UTC [3254536] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries took 0.6 seconds 2023-05-11 19:51:45,003 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries (priority 0) in 0:00:07.594077 2023-05-11 19:51:45,015 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 16 tasks waiting for ancestors, 32/56 done 2023-05-11 19:51:45,091 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/fgco2 (priority 43) in 0:00:00.179475 2023-05-11 19:51:45,118 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 16 tasks waiting for ancestors, 34/56 done 2023-05-11 19:51:45,120 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/chl in process [3254537] 2023-05-11 19:51:45,122 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/dfe in process [3254536] 2023-05-11 19:51:45,123 UTC [3254537] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics'] 2023-05-11 19:51:45,123 UTC [3254537] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:45,123 UTC [3254537] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:45,124 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:45,124 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,124 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:45,124 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:45,124 UTC [3254537] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:45,125 UTC [3254536] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics'] 2023-05-11 19:51:45,125 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:45,125 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:45,126 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:45,126 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,127 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:45,127 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:45,127 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:45,137 UTC [3254537] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:45,137 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:45,138 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,141 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:45,143 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:45,143 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:45,143 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:45,144 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:45,144 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:45,144 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:45,145 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:45,146 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,148 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:45,149 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,149 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:45,149 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:45,150 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:45,150 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:45,151 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:45,151 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:45,151 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:45,151 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:45,152 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:45,152 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:45,153 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:45,154 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:45,157 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:45,158 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:45,159 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:45,159 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:45,160 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:45,161 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:45,161 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:45,162 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:45,219 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 14 tasks waiting for ancestors, 35/56 done 2023-05-11 19:51:45,221 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/areacello in process [3254538] 2023-05-11 19:51:45,224 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:45,225 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:45,225 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:45,225 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:45,225 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:45,225 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:45,231 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 19:51:45,231 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:45,232 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:45,233 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:45,233 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 19:51:45,234 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:45,234 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:45,235 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:45,235 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 19:51:45,235 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:45,236 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 19:51:45,236 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:45,237 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:45,237 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:45,238 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 19:51:45,238 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 19:51:45,254 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/areacello (priority 46) in 0:00:00.032658 2023-05-11 19:51:45,319 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 13 tasks waiting for ancestors, 35/56 done 2023-05-11 19:51:45,420 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 13 tasks waiting for ancestors, 36/56 done 2023-05-11 19:51:45,423 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/thetao in process [3254538] 2023-05-11 19:51:45,434 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:45,434 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:45,434 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:45,435 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:45,435 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:45,435 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:45,435 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:45,435 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:45,436 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:45,449 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:45,450 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:45,450 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:45,462 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:45,463 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:45,465 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:45,467 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:45,469 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:45,472 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:45,476 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:45,478 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:45,479 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:45,480 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:45,481 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:45,482 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:45,484 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:45,485 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:45,485 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:45,486 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:45,486 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:45,487 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:45,487 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:45,488 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:45,492 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:45,493 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:45,500 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:45,501 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:45,504 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:45,506 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:45,508 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:45,510 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 19:51:45,510 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:45,520 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 12 tasks waiting for ancestors, 36/56 done 2023-05-11 19:51:45,906 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:45,907 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:45,919 UTC [3254537] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:45,920 UTC [3254537] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:45,922 UTC [3254537] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 19:51:45,922 UTC [3254537] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:45,941 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/chl (priority 44) in 0:00:00.821049 2023-05-11 19:51:45,966 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:45,967 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:45,980 UTC [3254536] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:45,980 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:45,982 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 19:51:45,982 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:46,001 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/dfe (priority 45) in 0:00:00.879334 2023-05-11 19:51:46,077 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:46,077 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:46,078 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:46,078 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,078 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:46,078 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:46,078 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:46,091 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:46,091 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:46,093 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,096 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:46,097 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:46,097 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:46,098 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:46,099 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:46,100 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:46,103 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:46,104 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,104 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:46,105 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:46,105 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:46,106 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:46,106 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:46,107 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:46,111 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:46,113 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:46,119 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:46,120 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:46,121 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 12 tasks waiting for ancestors, 38/56 done 2023-05-11 19:51:46,123 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:46,124 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:46,126 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:46,127 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/so in process [3254536] 2023-05-11 19:51:46,129 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 19:51:46,129 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:46,133 UTC [3254537] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/Global_Ocean_surface_map in process [3254537] 2023-05-11 19:51:46,136 UTC [3254537] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map/settings.yml'] 2023-05-11 19:51:46,136 UTC [3254537] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:46,136 UTC [3254537] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 19:51:46,136 UTC [3254537] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 19:51:46,136 UTC [3254537] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 19:51:46,137 UTC [3254537] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map/log.txt 2023-05-11 19:51:46,137 UTC [3254537] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map/settings.yml 2023-05-11 19:51:46,138 UTC [3254536] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:46,138 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:46,138 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:46,138 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:46,139 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,139 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:46,139 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:46,139 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:46,152 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 19:51:46,152 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:46,154 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,157 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:46,159 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 19:51:46,159 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:46,160 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:46,161 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:46,161 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:46,164 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:46,165 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 19:51:46,166 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:46,166 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:46,167 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:46,167 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:46,168 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:46,168 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:46,173 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:46,174 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:46,181 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:46,182 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:46,186 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:46,187 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:46,189 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:46,190 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 19:51:46,190 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:46,222 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 10 tasks waiting for ancestors, 38/56 done 2023-05-11 19:51:46,616 UTC [3254542] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.4 GB 2023-05-11 19:51:46,617 UTC [3254542] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:46,617 UTC [3254542] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 19:51:46,618 UTC [3254542] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_scalars/Scalar_timeseries/diagnostic_provenance.yml 2023-05-11 19:51:46,691 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,691 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,691 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,691 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27400 2023-05-11 19:51:46,752 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,752 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,752 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,752 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27757 2023-05-11 19:51:46,812 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,812 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,812 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,812 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28810 2023-05-11 19:51:46,872 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,872 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,872 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,872 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27443 2023-05-11 19:51:46,915 UTC [3254540] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 19:51:46,915 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:46,929 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:46,935 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,935 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,935 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,935 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27934 2023-05-11 19:51:46,995 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:46,995 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:46,995 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:46,995 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27809 2023-05-11 19:51:47,033 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:47,035 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 19:51:47,035 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:47,054 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,054 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,055 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,055 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28247 2023-05-11 19:51:47,055 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:47,055 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:47,055 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:47,055 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,056 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,056 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:47,056 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,056 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:47,071 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:47,071 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,071 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:47,084 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:47,084 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:47,086 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,089 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:47,091 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:47,094 UTC [3254540] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:47,099 UTC [3254540] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:47,101 UTC [3254540] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:47,103 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:47,103 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:47,104 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:47,105 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:47,108 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:47,109 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,109 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:47,110 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:47,110 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:47,111 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:47,111 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:47,111 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:47,114 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:47,114 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,114 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,114 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,114 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28059 2023-05-11 19:51:47,114 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:47,115 UTC [3254540] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_potential_temperature / (K) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 19:51:47,115 UTC [3254540] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 19:51:47,118 UTC [3254540] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_potential_temperature / (K) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:47,119 UTC [3254540] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 19:51:47,130 UTC [3254540] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:47,130 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:47,131 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 19:51:47,131 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:47,174 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,174 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,174 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,174 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27391 2023-05-11 19:51:47,201 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/thetao (priority 15) in 0:00:15.350718 2023-05-11 19:51:47,234 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,234 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,234 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,234 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 26827 2023-05-11 19:51:47,295 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,295 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,295 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,295 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29394 2023-05-11 19:51:47,323 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 10 tasks waiting for ancestors, 39/56 done 2023-05-11 19:51:47,326 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/no3 in process [3254540] 2023-05-11 19:51:47,338 UTC [3254540] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:47,338 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:47,338 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:47,338 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:47,338 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:47,339 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:47,339 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:47,339 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,339 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:47,354 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:47,354 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,354 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:47,355 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,355 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,355 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,355 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29592 2023-05-11 19:51:47,366 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 19:51:47,366 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:47,368 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:47,371 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:47,373 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:47,375 UTC [3254540] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:47,380 UTC [3254540] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:47,382 UTC [3254540] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:47,383 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:47,384 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:47,385 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:47,385 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:47,388 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:47,389 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:47,389 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:47,390 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:47,390 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:47,391 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:47,391 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:47,392 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:47,396 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:47,398 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:47,404 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:47,405 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:47,409 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:47,410 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:47,412 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:47,415 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 19:51:47,415 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,415 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,415 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,415 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28907 2023-05-11 19:51:47,415 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 19:51:47,424 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 9 tasks waiting for ancestors, 39/56 done 2023-05-11 19:51:47,475 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,475 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,476 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,476 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29186 2023-05-11 19:51:47,536 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,536 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,536 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,536 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29589 2023-05-11 19:51:47,559 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/thetao (priority 48) in 0:00:02.135934 2023-05-11 19:51:47,592 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,596 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,596 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,596 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,596 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28841 2023-05-11 19:51:47,629 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_1.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,633 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,633 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,633 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,633 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28354 2023-05-11 19:51:47,667 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_10.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,670 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,671 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,671 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,671 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27827 2023-05-11 19:51:47,688 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:47,688 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:47,688 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:47,689 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,689 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,689 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:47,690 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,690 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,703 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,703 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,703 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,704 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_11.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,708 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,708 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,708 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,708 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29955 2023-05-11 19:51:47,716 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,716 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:47,718 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,720 UTC [3254536] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,721 UTC [3254536] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 19:51:47,721 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:47,723 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:47,725 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 9 tasks waiting for ancestors, 40/56 done 2023-05-11 19:51:47,727 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/si in process [3254538] 2023-05-11 19:51:47,725 UTC [3254536] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:47,730 UTC [3254536] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:47,732 UTC [3254536] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:47,734 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:47,735 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:47,736 UTC [3254536] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 19:51:47,736 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:47,736 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:47,737 UTC [3254538] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:47,737 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:47,737 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:47,737 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:47,738 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,738 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:47,738 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,738 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:47,739 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:47,740 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:47,741 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:47,742 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_12.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,742 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 19:51:47,742 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:47,743 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:47,743 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:47,744 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:47,745 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,745 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,745 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,745 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30589 2023-05-11 19:51:47,749 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:47,750 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:47,750 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:47,750 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:47,751 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,755 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:47,756 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:47,756 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:47,757 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:47,757 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:47,758 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:47,758 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:47,759 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:47,762 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:47,762 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:47,763 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,763 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:47,763 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:47,764 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:47,765 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:47,765 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:47,765 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:47,765 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:47,766 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:47,766 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 19:51:47,767 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 19:51:47,770 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:47,772 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:47,778 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:47,779 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:47,779 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_13.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,783 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:47,783 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,783 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,783 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,783 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29744 2023-05-11 19:51:47,784 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:47,786 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:47,788 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 19:51:47,789 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 19:51:47,817 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_14.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,822 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,822 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,822 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,822 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30250 2023-05-11 19:51:47,825 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 8 tasks waiting for ancestors, 40/56 done 2023-05-11 19:51:47,856 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_2.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,860 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,860 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,860 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,860 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29852 2023-05-11 19:51:47,894 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_3.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,898 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,898 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,898 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,898 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28141 2023-05-11 19:51:47,932 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_4.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,936 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,936 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,936 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,936 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28823 2023-05-11 19:51:47,970 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_5.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:47,971 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:47,971 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:47,971 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:47,972 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,972 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:47,972 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:47,972 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:47,973 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:47,973 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:47,973 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:47,973 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28834 2023-05-11 19:51:47,986 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:47,986 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:47,988 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,990 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:47,992 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:47,992 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:47,993 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:47,994 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:47,994 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:47,997 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:47,998 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:47,999 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:47,999 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 19:51:48,000 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,001 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,001 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,001 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,006 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,007 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,007 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_6.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:48,011 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:48,011 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:48,011 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:48,011 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30340 2023-05-11 19:51:48,013 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,015 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,018 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,020 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,022 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,024 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 19:51:48,024 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 19:51:48,045 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_7.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:48,048 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:48,048 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:48,048 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:48,048 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29636 2023-05-11 19:51:48,082 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_8.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:48,086 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:48,086 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:48,086 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:48,086 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28811 2023-05-11 19:51:48,120 UTC [3254542] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_9.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 19:51:48,122 UTC [3254541] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 19:51:48,123 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 19:51:48,123 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:48,123 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:48,123 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:48,124 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27957 2023-05-11 19:51:48,138 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,157 UTC [3254542] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_scalars/Scalar_timeseries took 1.5 seconds 2023-05-11 19:51:48,157 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_scalars/Scalar_timeseries (priority 21) in 0:00:14.583818 2023-05-11 19:51:48,185 UTC [3254538] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:48,186 UTC [3254538] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:48,186 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:48,186 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,187 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,187 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:48,187 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,187 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:48,199 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:48,200 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,200 UTC [3254538] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:48,212 UTC [3254538] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 19:51:48,212 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:48,214 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,217 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:48,219 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:48,221 UTC [3254538] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:48,225 UTC [3254538] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:48,228 UTC [3254538] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:48,229 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:48,229 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:48,230 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:48,231 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:48,234 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:48,235 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,235 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:48,236 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 19:51:48,236 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,237 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,237 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,237 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,237 UTC [3254541] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,239 UTC [3254541] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 19:51:48,239 UTC [3254541] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:48,242 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,243 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,249 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,251 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,254 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,255 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,257 UTC [3254538] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,260 UTC [3254538] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 19:51:48,260 UTC [3254538] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 19:51:48,263 UTC [3254541] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/so (priority 16) in 0:00:16.412007 2023-05-11 19:51:48,326 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 8 tasks waiting for ancestors, 41/56 done 2023-05-11 19:51:48,328 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/o2 in process [3254542] 2023-05-11 19:51:48,342 UTC [3254542] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:48,342 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:48,342 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:48,342 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:48,343 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,343 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:48,343 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,343 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,352 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/so (priority 49) in 0:00:02.224834 2023-05-11 19:51:48,356 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,356 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:48,358 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,360 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:48,362 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:48,362 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:48,363 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:48,364 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:48,364 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:48,367 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:48,368 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,368 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:48,369 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:48,369 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,370 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,370 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,371 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,375 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,377 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,383 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,384 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,388 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,389 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,391 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,393 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 19:51:48,393 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 19:51:48,426 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 7 tasks waiting for ancestors, 42/56 done 2023-05-11 19:51:48,445 UTC [3254541] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries in process [3254541] 2023-05-11 19:51:48,448 UTC [3254541] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 19:51:48,449 UTC [3254541] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:48,449 UTC [3254541] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:48,449 UTC [3254541] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:48,449 UTC [3254541] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 19:51:48,449 UTC [3254541] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/log.txt 2023-05-11 19:51:48,450 UTC [3254541] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml 2023-05-11 19:51:48,451 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/no3 (priority 50) in 0:00:01.124752 2023-05-11 19:51:48,526 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 6 tasks waiting for ancestors, 43/56 done 2023-05-11 19:51:48,529 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_transect_no_data/chl in process [3254536] 2023-05-11 19:51:48,534 UTC [3254536] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:48,534 UTC [3254536] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:48,534 UTC [3254536] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:48,535 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:48,535 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,535 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:48,536 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,536 UTC [3254536] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,554 UTC [3254536] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,554 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:48,557 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,564 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:48,566 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:48,566 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:48,567 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:48,568 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:48,569 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:48,573 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:48,575 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,575 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:48,577 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 19:51:48,577 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,578 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,578 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,580 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,586 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,588 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,598 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,600 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,605 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,607 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,610 UTC [3254536] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,614 UTC [3254536] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 19:51:48,614 UTC [3254536] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 19:51:48,627 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 5 tasks waiting for ancestors, 44/56 done 2023-05-11 19:51:48,665 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_transect_no_data/dfe in process [3254540] 2023-05-11 19:51:48,668 UTC [3254540] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 19:51:48,668 UTC [3254540] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:48,668 UTC [3254540] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:48,668 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:48,669 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,669 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:48,669 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,669 UTC [3254540] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,681 UTC [3254540] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 19:51:48,681 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:48,683 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,685 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:48,687 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 19:51:48,687 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:48,688 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:48,689 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:48,690 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 19:51:48,692 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:48,693 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 19:51:48,693 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:48,694 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 19:51:48,695 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,695 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,695 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,696 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,701 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,702 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,708 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,709 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,713 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,714 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,716 UTC [3254540] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,718 UTC [3254540] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 19:51:48,718 UTC [3254540] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 19:51:48,727 UTC [3254392] INFO esmvalcore._task:778 Progress: 8 tasks running, 4 tasks waiting for ancestors, 44/56 done 2023-05-11 19:51:48,856 UTC [3254542] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:48,856 UTC [3254542] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:48,856 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:48,857 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,857 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,857 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:48,857 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,857 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:48,871 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:48,871 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:48,871 UTC [3254542] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:48,883 UTC [3254542] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 19:51:48,883 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:48,886 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,888 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:48,890 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:48,894 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/si (priority 51) in 0:00:01.167468 2023-05-11 19:51:48,892 UTC [3254542] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:48,897 UTC [3254542] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:48,899 UTC [3254542] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:48,900 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:48,901 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:48,902 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:48,903 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:48,905 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:48,906 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 19:51:48,906 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:48,907 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 19:51:48,907 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:48,908 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:48,908 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:48,909 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:48,913 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 19:51:48,914 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 19:51:48,921 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:48,922 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:48,925 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 19:51:48,927 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 19:51:48,929 UTC [3254542] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:48,931 UTC [3254542] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 19:51:48,931 UTC [3254542] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 19:51:49,028 UTC [3254392] INFO esmvalcore._task:778 Progress: 7 tasks running, 4 tasks waiting for ancestors, 45/56 done 2023-05-11 19:51:49,046 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/chl (priority 54) in 0:00:00.516576 2023-05-11 19:51:49,120 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/dfe (priority 55) in 0:00:00.455358 2023-05-11 19:51:49,228 UTC [3254392] INFO esmvalcore._task:778 Progress: 5 tasks running, 4 tasks waiting for ancestors, 47/56 done 2023-05-11 19:51:49,234 UTC [3254538] INFO esmvalcore._task:259 Starting task diag_transect_no_data/Transects_no_data in process [3254538] 2023-05-11 19:51:49,236 UTC [3254538] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data/settings.yml'] 2023-05-11 19:51:49,236 UTC [3254538] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:49,236 UTC [3254538] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data 2023-05-11 19:51:49,236 UTC [3254538] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_transect_no_data/Transects_no_data 2023-05-11 19:51:49,236 UTC [3254538] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_transect_no_data/Transects_no_data 2023-05-11 19:51:49,236 UTC [3254538] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data/log.txt 2023-05-11 19:51:49,236 UTC [3254538] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data/settings.yml 2023-05-11 19:51:49,364 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 3 tasks waiting for ancestors, 47/56 done 2023-05-11 19:51:49,575 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/o2 (priority 52) in 0:00:01.245839 2023-05-11 19:51:49,764 UTC [3254392] INFO esmvalcore._task:778 Progress: 5 tasks running, 3 tasks waiting for ancestors, 48/56 done 2023-05-11 19:51:49,778 UTC [3254536] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/Transects_vs_WOA in process [3254536] 2023-05-11 19:51:49,782 UTC [3254536] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA/settings.yml'] 2023-05-11 19:51:49,782 UTC [3254536] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:49,782 UTC [3254536] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 19:51:49,782 UTC [3254536] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 19:51:49,783 UTC [3254536] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 19:51:49,783 UTC [3254536] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA/log.txt 2023-05-11 19:51:49,783 UTC [3254536] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA/settings.yml 2023-05-11 19:51:49,865 UTC [3254392] INFO esmvalcore._task:778 Progress: 6 tasks running, 2 tasks waiting for ancestors, 48/56 done 2023-05-11 19:51:54,252 UTC [3254538] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.4 GB 2023-05-11 19:51:54,252 UTC [3254538] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:54,252 UTC [3254538] DEBUG esmvalcore._task:589 Script ocean/diagnostic_transects.py completed successfully 2023-05-11 19:51:54,253 UTC [3254538] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_no_data/Transects_no_data/diagnostic_provenance.yml 2023-05-11 19:51:54,265 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:54,265 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:54,266 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:54,266 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55742 2023-05-11 19:51:54,307 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:54,307 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:54,307 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:54,307 UTC [3254538] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 46941 2023-05-11 19:51:54,347 UTC [3254538] DEBUG esmvalcore._task:683 Collecting provenance of task diag_transect_no_data/Transects_no_data took 0.1 seconds 2023-05-11 19:51:54,347 UTC [3254538] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/Transects_no_data (priority 53) in 0:00:05.112787 2023-05-11 19:51:54,471 UTC [3254392] INFO esmvalcore._task:778 Progress: 5 tasks running, 2 tasks waiting for ancestors, 49/56 done 2023-05-11 19:51:56,247 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:56,249 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:56,276 UTC [3254539] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:56,277 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:56,278 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:56,290 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:56,292 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 19:51:56,293 UTC [3254539] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 19:51:56,312 UTC [3254539] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:56,312 UTC [3254539] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 19:51:56,313 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 19:51:56,313 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:56,314 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:56,314 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 19:51:56,314 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:56,314 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:56,328 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:56,328 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 19:51:56,328 UTC [3254539] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:56,341 UTC [3254539] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 19:51:56,341 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 19:51:56,343 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:56,346 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 19:51:56,348 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 19:51:56,351 UTC [3254539] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 19:51:56,356 UTC [3254539] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 19:51:56,359 UTC [3254539] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 19:51:56,360 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 19:51:56,361 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:56,362 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 19:51:56,363 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 19:51:56,366 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 19:51:56,367 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 19:51:56,367 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 19:51:56,368 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 19:51:56,368 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 19:51:56,369 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 19:51:56,369 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 19:51:56,370 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 19:51:56,374 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:56,375 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:56,379 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:56,380 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:56,382 UTC [3254539] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:56,384 UTC [3254539] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 19:51:56,384 UTC [3254539] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 19:51:56,439 UTC [3254539] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/thetao (priority 35) in 0:00:18.038546 2023-05-11 19:51:56,485 UTC [3254541] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 19:51:56,486 UTC [3254541] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:51:56,487 UTC [3254541] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 19:51:56,487 UTC [3254541] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 19:51:56,537 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,537 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,537 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,537 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 25417 2023-05-11 19:51:56,537 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 19:51:56,539 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 19:51:56,562 UTC [3254543] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 19:51:56,562 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 19:51:56,564 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 19:51:56,574 UTC [3254392] INFO esmvalcore._task:778 Progress: 4 tasks running, 2 tasks waiting for ancestors, 50/56 done 2023-05-11 19:51:56,576 UTC [3254543] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 19:51:56,577 UTC [3254543] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 19:51:56,578 UTC [3254543] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 19:51:56,600 UTC [3254543] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/so (priority 36) in 0:00:17.398517 2023-05-11 19:51:56,601 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,601 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,601 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,601 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37856 2023-05-11 19:51:56,671 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,671 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,671 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,671 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18271 2023-05-11 19:51:56,731 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,731 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,731 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,731 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15382 2023-05-11 19:51:56,774 UTC [3254392] INFO esmvalcore._task:778 Progress: 3 tasks running, 2 tasks waiting for ancestors, 51/56 done 2023-05-11 19:51:56,793 UTC [3254540] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_surface_map in process [3254540] 2023-05-11 19:51:56,793 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,793 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,793 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,793 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 52178 2023-05-11 19:51:56,796 UTC [3254540] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml'] 2023-05-11 19:51:56,796 UTC [3254540] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:56,796 UTC [3254540] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 19:51:56,796 UTC [3254540] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 19:51:56,796 UTC [3254540] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 19:51:56,796 UTC [3254540] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/log.txt 2023-05-11 19:51:56,796 UTC [3254540] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml 2023-05-11 19:51:56,799 UTC [3254542] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs in process [3254542] 2023-05-11 19:51:56,803 UTC [3254542] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_model_vs_obs.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/settings.yml'] 2023-05-11 19:51:56,803 UTC [3254542] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 19:51:56,803 UTC [3254542] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 19:51:56,803 UTC [3254542] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/work/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 19:51:56,803 UTC [3254542] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 19:51:56,803 UTC [3254542] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/log.txt 2023-05-11 19:51:56,803 UTC [3254542] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_model_vs_obs.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/settings.yml 2023-05-11 19:51:56,854 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:56,858 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,858 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,858 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,858 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39563 2023-05-11 19:51:56,875 UTC [3254392] INFO esmvalcore._task:778 Progress: 5 tasks running, 0 tasks waiting for ancestors, 51/56 done 2023-05-11 19:51:56,978 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:56,985 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:56,985 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:56,985 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:56,986 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42312 2023-05-11 19:51:57,023 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,027 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,027 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,027 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,027 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 31450 2023-05-11 19:51:57,087 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,091 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,091 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,091 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,091 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32415 2023-05-11 19:51:57,126 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,130 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,131 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,131 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,131 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27636 2023-05-11 19:51:57,165 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_so_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,169 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,169 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,169 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,169 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 13714 2023-05-11 19:51:57,197 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_thetao_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,201 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,201 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,201 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,201 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19348 2023-05-11 19:51:57,231 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_no3_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,234 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,235 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,235 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,235 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15284 2023-05-11 19:51:57,268 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_o2_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,271 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,271 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,272 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,272 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 17033 2023-05-11 19:51:57,301 UTC [3254541] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_si_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 19:51:57,304 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:51:57,305 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:51:57,305 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:51:57,305 UTC [3254541] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 16557 2023-05-11 19:51:57,334 UTC [3254541] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries took 0.8 seconds 2023-05-11 19:51:57,334 UTC [3254541] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries (priority 14) in 0:00:08.888623 2023-05-11 19:51:57,476 UTC [3254392] INFO esmvalcore._task:778 Progress: 4 tasks running, 0 tasks waiting for ancestors, 52/56 done 2023-05-11 19:52:09,859 UTC [3254536] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.5 GB 2023-05-11 19:52:09,860 UTC [3254536] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:52:09,860 UTC [3254536] DEBUG esmvalcore._task:589 Script ocean/diagnostic_transects.py completed successfully 2023-05-11 19:52:09,860 UTC [3254536] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_transect_vs_WOA/Transects_vs_WOA/diagnostic_provenance.yml 2023-05-11 19:52:09,931 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:09,931 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:09,931 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:09,931 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:09,998 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:09,998 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:09,998 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:09,998 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,068 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,068 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,068 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,068 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,142 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,143 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,143 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,143 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 24429 2023-05-11 19:52:10,203 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,203 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,203 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,203 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 54096 2023-05-11 19:52:10,263 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,263 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,263 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,263 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,334 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,334 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,334 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,334 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,404 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,404 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,405 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,405 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,473 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,473 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,473 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,473 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,541 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,541 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,541 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,541 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,608 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,608 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,608 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,608 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,678 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,678 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,678 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,678 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41688 2023-05-11 19:52:10,716 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,717 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 59861 2023-05-11 19:52:10,755 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,755 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,755 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,755 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,806 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,806 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,806 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,806 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55379 2023-05-11 19:52:10,844 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,844 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,844 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,844 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:10,887 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,887 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,887 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,887 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55944 2023-05-11 19:52:10,926 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,926 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,926 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,926 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 21584 2023-05-11 19:52:10,962 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:10,962 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:10,962 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:10,962 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55287 2023-05-11 19:52:11,002 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,002 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,003 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,003 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:11,047 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,049 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,049 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,049 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 38974 2023-05-11 19:52:11,086 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,086 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,086 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,086 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:11,128 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,129 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,129 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,129 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39224 2023-05-11 19:52:11,173 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,173 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,173 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,173 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:11,213 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,213 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,213 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,213 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39798 2023-05-11 19:52:11,251 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,251 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,251 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,251 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19864 2023-05-11 19:52:11,286 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:11,286 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:11,286 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:11,286 UTC [3254536] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39469 2023-05-11 19:52:11,319 UTC [3254536] DEBUG esmvalcore._task:683 Collecting provenance of task diag_transect_vs_WOA/Transects_vs_WOA took 1.5 seconds 2023-05-11 19:52:11,319 UTC [3254536] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/Transects_vs_WOA (priority 47) in 0:00:21.540814 2023-05-11 19:52:11,491 UTC [3254392] INFO esmvalcore._task:778 Progress: 3 tasks running, 0 tasks waiting for ancestors, 53/56 done 2023-05-11 19:52:22,905 UTC [3254540] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-11 19:52:22,905 UTC [3254540] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-11 19:52:22,939 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:22,939 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:22,939 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:22,939 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:22,983 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:22,983 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:22,983 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:22,983 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,027 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,027 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,027 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,027 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,071 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,071 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,071 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,071 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,115 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,115 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,115 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,115 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,158 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,158 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,158 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,158 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,199 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,199 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,199 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,199 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,241 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,241 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,242 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,242 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,286 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,286 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,286 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,286 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,330 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,330 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,330 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,330 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,375 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:23,375 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:23,375 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:23,375 UTC [3254540] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:23,414 UTC [3254540] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_surface_map took 0.5 seconds 2023-05-11 19:52:23,414 UTC [3254540] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_surface_map (priority 33) in 0:00:26.620840 2023-05-11 19:52:23,605 UTC [3254392] INFO esmvalcore._task:778 Progress: 2 tasks running, 0 tasks waiting for ancestors, 54/56 done 2023-05-11 19:52:24,896 UTC [3254542] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-11 19:52:24,897 UTC [3254542] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:52:24,897 UTC [3254542] DEBUG esmvalcore._task:589 Script ocean/diagnostic_model_vs_obs.py completed successfully 2023-05-11 19:52:24,898 UTC [3254542] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/diagnostic_provenance.yml 2023-05-11 19:52:24,927 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:24,927 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:24,927 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:24,927 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:25,171 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:25,171 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:25,171 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:25,171 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:25,416 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:25,416 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:25,416 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:25,416 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32319 2023-05-11 19:52:25,472 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:25,473 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:25,473 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:25,473 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:25,721 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:25,721 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:25,721 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:25,721 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 35957 2023-05-11 19:52:25,778 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:25,778 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:25,778 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:25,778 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:26,025 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:26,025 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:26,025 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:26,026 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:26,267 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:26,267 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:26,267 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:26,267 UTC [3254542] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 33711 2023-05-11 19:52:26,316 UTC [3254542] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs took 1.4 seconds 2023-05-11 19:52:26,316 UTC [3254542] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs (priority 34) in 0:00:29.516381 2023-05-11 19:52:26,651 UTC [3254392] INFO esmvalcore._task:778 Progress: 1 tasks running, 0 tasks waiting for ancestors, 55/56 done 2023-05-11 19:52:56,344 UTC [3254537] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-11 19:52:56,344 UTC [3254537] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:52:56,345 UTC [3254537] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-11 19:52:56,345 UTC [3254537] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/diag_surface_maps_no_data/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-11 19:52:56,364 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:56,364 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:56,364 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:56,364 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:56,416 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:56,416 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:56,416 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:56,416 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:56,462 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:56,462 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:56,462 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:56,462 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:56,510 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:56,510 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:56,510 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:56,510 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:56,557 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 19:52:56,557 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 19:52:56,557 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 19:52:56,557 UTC [3254537] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 19:52:56,593 UTC [3254537] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_no_data/Global_Ocean_surface_map took 0.2 seconds 2023-05-11 19:52:56,593 UTC [3254537] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/Global_Ocean_surface_map (priority 41) in 0:01:10.459510 2023-05-11 19:52:56,685 UTC [3254392] INFO esmvalcore._task:778 Progress: 0 tasks running, 0 tasks waiting for ancestors, 56/56 done 2023-05-11 19:52:56,685 UTC [3254392] INFO esmvalcore._task:783 Successfully completed all tasks. 2023-05-11 19:52:56,759 UTC [3254392] INFO esmvalcore._recipe.recipe:1309 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/run/recipe_ocean_bgc_filled.yml 2023-05-11 19:52:56,849 UTC [3254392] INFO esmvalcore.experimental.recipe_output:205 Wrote recipe output to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_195128/index.html 2023-05-11 19:52:56,849 UTC [3254392] INFO esmvalcore._main:125 Ending the Earth System Model Evaluation Tool at time: 2023-05-11 19:52:56 UTC 2023-05-11 19:52:56,849 UTC [3254392] INFO esmvalcore._main:128 Time for running the recipe was: 0:01:27.616430 2023-05-11 19:52:57,158 UTC [3254392] INFO esmvalcore._task:126 Maximum memory used (estimate): 18.0 GB 2023-05-11 19:52:57,159 UTC [3254392] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 19:52:57,160 UTC [3254392] INFO esmvalcore._main:453 Run was successful