2023-05-12 11:33:55,653 UTC [3456058] INFO esmvalcore._main:495 ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! 2023-05-12 11:33:55,653 UTC [3456058] INFO esmvalcore._main:496 Package versions 2023-05-12 11:33:55,653 UTC [3456058] INFO esmvalcore._main:497 ---------------- 2023-05-12 11:33:55,653 UTC [3456058] INFO esmvalcore._main:498 ESMValCore: 2.8.0 2023-05-12 11:33:55,654 UTC [3456058] INFO esmvalcore._main:500 ESMValTool: 2.8.0 2023-05-12 11:33:55,654 UTC [3456058] INFO esmvalcore._main:501 ---------------- 2023-05-12 11:33:55,654 UTC [3456058] INFO esmvalcore._main:502 Using config file /nird/home/yanchun/.esmvaltool/config-NS9560K.yml 2023-05-12 11:33:55,654 UTC [3456058] INFO esmvalcore._main:503 Writing program log files to: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/main_log.txt /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/main_log_debug.txt 2023-05-12 11:33:56,243 UTC [3456058] INFO esmvalcore._main:85 Starting the Earth System Model Evaluation Tool at time: 2023-05-12 11:33:56 UTC 2023-05-12 11:33:56,243 UTC [3456058] INFO esmvalcore._main:89 ---------------------------------------------------------------------- 2023-05-12 11:33:56,243 UTC [3456058] INFO esmvalcore._main:90 RECIPE = /nird/home/yanchun/diagnostics/noresmvaltool/esmvaltool/tested_recipes/recipe_ocean_bgc.yml 2023-05-12 11:33:56,244 UTC [3456058] INFO esmvalcore._main:91 RUNDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run 2023-05-12 11:33:56,244 UTC [3456058] INFO esmvalcore._main:92 WORKDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/work 2023-05-12 11:33:56,244 UTC [3456058] INFO esmvalcore._main:93 PREPROCDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc 2023-05-12 11:33:56,244 UTC [3456058] INFO esmvalcore._main:94 PLOTDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/plots 2023-05-12 11:33:56,244 UTC [3456058] INFO esmvalcore._main:95 ---------------------------------------------------------------------- 2023-05-12 11:33:56,246 UTC [3456058] INFO esmvalcore._main:98 Running tasks using at most 8 processes 2023-05-12 11:33:56,246 UTC [3456058] INFO esmvalcore._main:100 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. 2023-05-12 11:33:56,246 UTC [3456058] INFO esmvalcore._main:103 If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. 2023-05-12 11:33:56,247 UTC [3456058] DEBUG esmvalcore._recipe.check:52 Checking recipe against schema /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe_schema.yml 2023-05-12 11:33:56,293 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,294 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:33:56,295 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,295 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,295 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:33:56,295 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,295 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,296 UTC [3456058] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-fx.yml 2023-05-12 11:33:56,296 UTC [3456058] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-institutes.yml 2023-05-12 11:33:56,324 UTC [3456058] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-product.yml 2023-05-12 11:33:56,331 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,332 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:33:56,334 UTC [3456058] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-12 11:33:56,335 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:33:56,335 UTC [3456058] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:33:56,336 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1014 Retrieving diagnostics from recipe 2023-05-12 11:33:56,336 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,336 UTC [3456058] INFO esmvalcore._recipe.recipe:1232 Creating tasks from recipe 2023-05-12 11:33:56,336 UTC [3456058] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:33:56,336 UTC [3456058] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:33:56,337 UTC [3456058] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/so 2023-05-12 11:33:56,338 UTC [3456058] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'so' 2023-05-12 11:33:56,339 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,343 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:33:56,343 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:33:56,344 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-12 11:33:56,345 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:33:56,345 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-12 11:33:56,347 UTC [3456058] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/so created. 2023-05-12 11:33:56,347 UTC [3456058] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-12 11:33:56,347 UTC [3456058] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/no3 2023-05-12 11:33:56,347 UTC [3456058] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'no3' 2023-05-12 11:33:56,347 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,349 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:56,349 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:33:56,349 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-12 11:33:56,350 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:33:56,350 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,352 UTC [3456058] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/no3 created. 2023-05-12 11:33:56,352 UTC [3456058] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:33:56,352 UTC [3456058] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/si 2023-05-12 11:33:56,352 UTC [3456058] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'si' 2023-05-12 11:33:56,352 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,353 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:56,354 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:33:56,354 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-12 11:33:56,355 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:33:56,355 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,357 UTC [3456058] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/si created. 2023-05-12 11:33:56,357 UTC [3456058] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-12 11:33:56,357 UTC [3456058] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/o2 2023-05-12 11:33:56,357 UTC [3456058] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'o2' 2023-05-12 11:33:56,357 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,358 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:56,358 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:33:56,359 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-12 11:33:56,360 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:33:56,360 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-12 11:33:56,361 UTC [3456058] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/o2 created. 2023-05-12 11:33:56,361 UTC [3456058] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-12 11:33:56,362 UTC [3456058] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/areacello 2023-05-12 11:33:56,362 UTC [3456058] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-12 11:33:56,362 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:33:56,363 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:33:56,364 UTC [3456058] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-12 11:33:56,364 UTC [3456058] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:33:56,365 UTC [3456058] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:33:56,365 UTC [3456058] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-12 11:33:56,365 UTC [3456058] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/areacello created. 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_surface_map 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-12 11:33:56,366 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-12 11:33:56,367 UTC [3456058] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-12 11:33:56,367 UTC [3456058] INFO esmvalcore._recipe.recipe:1281 These tasks will be executed: diag_surface_maps_vs_WOA/o2, diag_surface_maps_vs_WOA/no3, diag_surface_maps_vs_WOA/areacello, diag_surface_maps_vs_WOA/si, diag_surface_maps_vs_WOA/so, diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:33:56,369 UTC [3456058] DEBUG esmvalcore._main:120 Recipe summary: DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None 2023-05-12 11:33:56,383 UTC [3456058] INFO esmvalcore._recipe.recipe:1344 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/recipe_ocean_bgc_filled.yml 2023-05-12 11:33:56,383 UTC [3456058] INFO esmvalcore._task:746 Running 6 tasks using 6 processes 2023-05-12 11:33:56,433 UTC [3456199] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/so in process [3456199] 2023-05-12 11:33:56,434 UTC [3456200] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/no3 in process [3456200] 2023-05-12 11:33:56,434 UTC [3456201] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/si in process [3456201] 2023-05-12 11:33:56,434 UTC [3456202] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/o2 in process [3456202] 2023-05-12 11:33:56,435 UTC [3456203] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/areacello in process [3456203] 2023-05-12 11:33:56,439 UTC [3456203] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,439 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,440 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:33:56,441 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,441 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,442 UTC [3456203] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:33:56,475 UTC [3456203] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:33:56,475 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:56,477 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:33:56,478 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:56,479 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-12 11:33:56,479 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:56,479 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-12 11:33:56,480 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:56,480 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:33:56,481 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:56,481 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-12 11:33:56,482 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:56,482 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:56,482 UTC [3456203] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:56,483 UTC [3456203] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-12 11:33:56,483 UTC [3456203] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-12 11:33:56,489 UTC [3456202] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:33:56,489 UTC [3456202] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-12 11:33:56,490 UTC [3456202] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,490 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,491 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,491 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,491 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,492 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,492 UTC [3456202] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:33:56,524 UTC [3456200] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:33:56,524 UTC [3456200] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-12 11:33:56,525 UTC [3456200] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,525 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,526 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,527 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,527 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,527 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,527 UTC [3456200] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:33:56,529 UTC [3456201] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:33:56,530 UTC [3456201] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-12 11:33:56,530 UTC [3456201] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,530 UTC [3456058] INFO esmvalcore._task:778 Progress: 5 tasks running, 1 tasks waiting for ancestors, 0/6 done 2023-05-12 11:33:56,531 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,531 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:56,533 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,533 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,533 UTC [3456201] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:56,534 UTC [3456202] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:33:56,535 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,535 UTC [3456202] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:33:56,536 UTC [3456199] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:33:56,536 UTC [3456199] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-12 11:33:56,537 UTC [3456199] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,537 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,538 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:33:56,539 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,540 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,540 UTC [3456199] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:33:56,549 UTC [3456202] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:33:56,549 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:56,553 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,556 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:56,558 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-12 11:33:56,562 UTC [3456202] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:33:56,566 UTC [3456202] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:33:56,569 UTC [3456202] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:33:56,570 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:56,571 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:33:56,572 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:56,573 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:33:56,578 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:56,579 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,579 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:56,580 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:33:56,581 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:56,581 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:56,581 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:56,582 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:56,585 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:56,586 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:56,591 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:56,592 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:56,594 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:56,596 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-12 11:33:56,597 UTC [3456202] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-12 11:33:56,647 UTC [3456200] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:33:56,647 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,647 UTC [3456200] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:33:56,661 UTC [3456200] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:33:56,661 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:56,664 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,667 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:56,669 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-12 11:33:56,673 UTC [3456200] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:33:56,678 UTC [3456200] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:33:56,680 UTC [3456200] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:33:56,682 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:56,682 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:33:56,684 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:56,684 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:33:56,690 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:56,691 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:56,691 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:56,692 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:33:56,692 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:56,693 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:56,693 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:56,694 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:56,696 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:56,697 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:56,702 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:56,703 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:56,705 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:56,707 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-12 11:33:56,708 UTC [3456200] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-12 11:33:56,754 UTC [3456199] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:33:56,754 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:56,757 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:33:56,761 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:56,762 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-12 11:33:56,762 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:56,763 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:33:56,764 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:56,765 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:33:56,771 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:56,772 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:33:56,772 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:56,773 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:33:56,773 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:56,774 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:56,774 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:56,775 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:56,801 UTC [3456203] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/areacello (priority 5) in 0:00:00.366038 2023-05-12 11:33:56,931 UTC [3456058] INFO esmvalcore._task:778 Progress: 4 tasks running, 1 tasks waiting for ancestors, 1/6 done 2023-05-12 11:33:56,951 UTC [3456202] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-12 11:33:56,951 UTC [3456202] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:56,952 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:56,952 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:56,953 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:56,953 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:56,953 UTC [3456202] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:57,084 UTC [3456200] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:33:57,084 UTC [3456200] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:57,084 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:57,085 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,085 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:57,086 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:57,086 UTC [3456200] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:57,088 UTC [3456201] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:57,088 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:57,091 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,094 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:57,096 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:33:57,096 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:57,097 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:33:57,098 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:57,098 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:33:57,104 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:57,105 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,105 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:57,106 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:33:57,106 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:57,107 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:57,107 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:57,108 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:57,321 UTC [3456200] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:57,321 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:57,323 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,325 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:57,327 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:33:57,327 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:57,328 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:33:57,329 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:57,329 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:33:57,333 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:57,333 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,334 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:57,335 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:33:57,335 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:57,336 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:57,336 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:57,337 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:57,363 UTC [3456202] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:33:57,364 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:57,366 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,368 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:57,370 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:33:57,370 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:57,371 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:33:57,372 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:57,372 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:33:57,376 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:57,377 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:33:57,377 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:57,378 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:33:57,378 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:57,379 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:57,379 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:57,380 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:58,154 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:58,155 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:58,168 UTC [3456200] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:33:58,168 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:58,169 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:58,180 UTC [3456200] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:58,182 UTC [3456200] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-12 11:33:58,182 UTC [3456200] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:33:58,204 UTC [3456200] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/no3 (priority 2) in 0:00:01.769511 2023-05-12 11:33:58,236 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:58,237 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:58,250 UTC [3456201] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:33:58,250 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:58,252 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:58,264 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:58,266 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-12 11:33:58,266 UTC [3456201] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-12 11:33:58,268 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:58,269 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:58,282 UTC [3456202] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:33:58,282 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:58,283 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:58,294 UTC [3456202] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:58,296 UTC [3456202] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-12 11:33:58,296 UTC [3456202] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-12 11:33:58,318 UTC [3456202] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/o2 (priority 4) in 0:00:01.882922 2023-05-12 11:33:58,327 UTC [3456201] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-12 11:33:58,327 UTC [3456201] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:33:58,327 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:33:58,328 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:58,328 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:58,328 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:33:58,328 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:58,328 UTC [3456201] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:33:58,333 UTC [3456058] INFO esmvalcore._task:778 Progress: 3 tasks running, 1 tasks waiting for ancestors, 2/6 done 2023-05-12 11:33:58,343 UTC [3456201] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:33:58,344 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:33:58,344 UTC [3456201] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:33:58,357 UTC [3456201] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:33:58,357 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:33:58,359 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:58,361 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:33:58,364 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-12 11:33:58,367 UTC [3456201] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:33:58,371 UTC [3456201] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:33:58,373 UTC [3456201] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:33:58,375 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:33:58,375 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:33:58,376 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:33:58,377 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:33:58,380 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:33:58,380 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:33:58,381 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:33:58,381 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:33:58,382 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:33:58,382 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:33:58,383 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:33:58,383 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:33:58,386 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:33:58,386 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:33:58,391 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:33:58,392 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:33:58,393 UTC [3456201] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:33:58,396 UTC [3456201] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-12 11:33:58,396 UTC [3456201] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-12 11:33:58,434 UTC [3456058] INFO esmvalcore._task:778 Progress: 2 tasks running, 1 tasks waiting for ancestors, 3/6 done 2023-05-12 11:33:58,442 UTC [3456201] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/si (priority 3) in 0:00:02.007936 2023-05-12 11:33:58,634 UTC [3456058] INFO esmvalcore._task:778 Progress: 1 tasks running, 1 tasks waiting for ancestors, 4/6 done 2023-05-12 11:34:13,817 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:34:13,818 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:34:13,842 UTC [3456199] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:34:13,842 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:34:13,844 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:34:13,854 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:34:13,856 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-12 11:34:13,856 UTC [3456199] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-12 11:34:13,924 UTC [3456199] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-12 11:34:13,925 UTC [3456199] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:34:13,925 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:34:13,925 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:34:13,926 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:34:13,926 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:34:13,926 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:34:13,926 UTC [3456199] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,939 UTC [3456199] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,939 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:34:13,940 UTC [3456199] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,956 UTC [3456199] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,956 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:34:13,959 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:34:13,960 UTC [3456199] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,961 UTC [3456199] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:34:13,961 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:34:13,964 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-12 11:34:13,967 UTC [3456199] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:34:13,971 UTC [3456199] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:34:13,973 UTC [3456199] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:34:13,975 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:34:13,975 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:34:13,976 UTC [3456199] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-12 11:34:13,976 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:34:13,977 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:34:13,980 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:34:13,981 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:34:13,982 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:34:13,983 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:34:13,983 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:34:13,984 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:34:13,984 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:34:13,984 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:34:13,987 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:34:13,987 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:34:13,992 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:34:13,993 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:34:13,995 UTC [3456199] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:34:13,996 UTC [3456199] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-12 11:34:13,996 UTC [3456199] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-12 11:34:14,094 UTC [3456199] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/so (priority 1) in 0:00:17.660021 2023-05-12 11:34:14,152 UTC [3456058] INFO esmvalcore._task:778 Progress: 0 tasks running, 1 tasks waiting for ancestors, 5/6 done 2023-05-12 11:34:14,165 UTC [3456204] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_surface_map in process [3456204] 2023-05-12 11:34:14,168 UTC [3456204] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml'] 2023-05-12 11:34:14,169 UTC [3456204] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-12 11:34:14,169 UTC [3456204] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:34:14,169 UTC [3456204] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:34:14,169 UTC [3456204] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:34:14,169 UTC [3456204] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/log.txt 2023-05-12 11:34:14,169 UTC [3456204] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml 2023-05-12 11:34:14,252 UTC [3456058] INFO esmvalcore._task:778 Progress: 1 tasks running, 0 tasks waiting for ancestors, 5/6 done 2023-05-12 11:34:37,240 UTC [3456204] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-12 11:34:37,241 UTC [3456204] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-12 11:34:37,242 UTC [3456204] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-12 11:34:37,242 UTC [3456204] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-12 11:34:37,330 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,330 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,330 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,330 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,497 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,497 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,497 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,497 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,545 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,545 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,545 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,545 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,592 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,592 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,592 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,592 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,638 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,638 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,638 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,638 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,682 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,682 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,682 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,682 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,727 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,727 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,727 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,727 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,774 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,774 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,775 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,775 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,822 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:34:37,822 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:34:37,822 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:34:37,822 UTC [3456204] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:34:37,862 UTC [3456204] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_surface_map took 0.6 seconds 2023-05-12 11:34:37,863 UTC [3456204] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_surface_map (priority 0) in 0:00:23.697104 2023-05-12 11:34:37,888 UTC [3456058] INFO esmvalcore._task:778 Progress: 0 tasks running, 0 tasks waiting for ancestors, 6/6 done 2023-05-12 11:34:37,888 UTC [3456058] INFO esmvalcore._task:783 Successfully completed all tasks. 2023-05-12 11:34:37,935 UTC [3456058] INFO esmvalcore._recipe.recipe:1309 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/run/recipe_ocean_bgc_filled.yml 2023-05-12 11:34:38,086 UTC [3456058] INFO esmvalcore.experimental.recipe_output:205 Wrote recipe output to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_113355/index.html 2023-05-12 11:34:38,087 UTC [3456058] INFO esmvalcore._main:125 Ending the Earth System Model Evaluation Tool at time: 2023-05-12 11:34:38 UTC 2023-05-12 11:34:38,087 UTC [3456058] INFO esmvalcore._main:128 Time for running the recipe was: 0:00:41.843835 2023-05-12 11:34:38,827 UTC [3456058] INFO esmvalcore._task:126 Maximum memory used (estimate): 6.4 GB 2023-05-12 11:34:38,828 UTC [3456058] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-12 11:34:38,828 UTC [3456058] INFO esmvalcore._main:453 Run was successful