2023-05-12 11:23:31,746 UTC [3453372] INFO esmvalcore._main:495 ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! 2023-05-12 11:23:31,746 UTC [3453372] INFO esmvalcore._main:496 Package versions 2023-05-12 11:23:31,746 UTC [3453372] INFO esmvalcore._main:497 ---------------- 2023-05-12 11:23:31,746 UTC [3453372] INFO esmvalcore._main:498 ESMValCore: 2.8.0 2023-05-12 11:23:31,746 UTC [3453372] INFO esmvalcore._main:500 ESMValTool: 2.8.0 2023-05-12 11:23:31,747 UTC [3453372] INFO esmvalcore._main:501 ---------------- 2023-05-12 11:23:31,747 UTC [3453372] INFO esmvalcore._main:502 Using config file /nird/home/yanchun/.esmvaltool/config-NS9560K.yml 2023-05-12 11:23:31,747 UTC [3453372] INFO esmvalcore._main:503 Writing program log files to: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/main_log.txt /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/main_log_debug.txt 2023-05-12 11:23:32,374 UTC [3453372] INFO esmvalcore._main:85 Starting the Earth System Model Evaluation Tool at time: 2023-05-12 11:23:32 UTC 2023-05-12 11:23:32,374 UTC [3453372] INFO esmvalcore._main:89 ---------------------------------------------------------------------- 2023-05-12 11:23:32,374 UTC [3453372] INFO esmvalcore._main:90 RECIPE = /nird/home/yanchun/diagnostics/noresmvaltool/esmvaltool/tested_recipes/recipe_ocean_bgc.yml 2023-05-12 11:23:32,374 UTC [3453372] INFO esmvalcore._main:91 RUNDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run 2023-05-12 11:23:32,375 UTC [3453372] INFO esmvalcore._main:92 WORKDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/work 2023-05-12 11:23:32,375 UTC [3453372] INFO esmvalcore._main:93 PREPROCDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc 2023-05-12 11:23:32,375 UTC [3453372] INFO esmvalcore._main:94 PLOTDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/plots 2023-05-12 11:23:32,375 UTC [3453372] INFO esmvalcore._main:95 ---------------------------------------------------------------------- 2023-05-12 11:23:32,376 UTC [3453372] INFO esmvalcore._main:98 Running tasks using at most 8 processes 2023-05-12 11:23:32,377 UTC [3453372] INFO esmvalcore._main:100 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. 2023-05-12 11:23:32,377 UTC [3453372] INFO esmvalcore._main:103 If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. 2023-05-12 11:23:32,378 UTC [3453372] DEBUG esmvalcore._recipe.check:52 Checking recipe against schema /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe_schema.yml 2023-05-12 11:23:32,426 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-12 11:23:32,427 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,428 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,429 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,429 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,429 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,429 UTC [3453372] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-fx.yml 2023-05-12 11:23:32,430 UTC [3453372] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-institutes.yml 2023-05-12 11:23:32,459 UTC [3453372] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-product.yml 2023-05-12 11:23:32,465 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,468 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:23:32,470 UTC [3453372] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-12 11:23:32,470 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:23:32,471 UTC [3453372] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-12 11:23:32,472 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1014 Retrieving diagnostics from recipe 2023-05-12 11:23:32,472 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,472 UTC [3453372] INFO esmvalcore._recipe.recipe:1232 Creating tasks from recipe 2023-05-12 11:23:32,472 UTC [3453372] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_vs_WOA 2023-05-12 11:23:32,472 UTC [3453372] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:23:32,472 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/thetao 2023-05-12 11:23:32,474 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'thetao' 2023-05-12 11:23:32,475 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,480 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:32,480 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:23:32,481 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-12 11:23:32,481 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-12 11:23:32,482 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-12 11:23:32,483 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/thetao created. 2023-05-12 11:23:32,483 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-12 11:23:32,484 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/so 2023-05-12 11:23:32,484 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'so' 2023-05-12 11:23:32,484 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,487 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:32,487 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:23:32,487 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-12 11:23:32,488 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,488 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-12 11:23:32,490 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/so created. 2023-05-12 11:23:32,490 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-12 11:23:32,490 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/no3 2023-05-12 11:23:32,490 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'no3' 2023-05-12 11:23:32,491 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,493 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:32,493 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:23:32,493 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-12 11:23:32,494 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:23:32,494 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,496 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/no3 created. 2023-05-12 11:23:32,496 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:23:32,496 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/si 2023-05-12 11:23:32,496 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'si' 2023-05-12 11:23:32,497 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,498 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:32,498 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:23:32,498 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-12 11:23:32,499 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:23:32,499 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,501 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/si created. 2023-05-12 11:23:32,501 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-12 11:23:32,501 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/o2 2023-05-12 11:23:32,501 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'o2' 2023-05-12 11:23:32,501 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,503 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:32,503 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-12 11:23:32,503 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-12 11:23:32,504 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:23:32,504 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-12 11:23:32,506 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/o2 created. 2023-05-12 11:23:32,506 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-12 11:23:32,506 UTC [3453372] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/areacello 2023-05-12 11:23:32,506 UTC [3453372] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-12 11:23:32,506 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-12 11:23:32,507 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:23:32,508 UTC [3453372] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-12 11:23:32,508 UTC [3453372] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-12 11:23:32,509 UTC [3453372] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:23:32,509 UTC [3453372] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-12 11:23:32,510 UTC [3453372] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/areacello created. 2023-05-12 11:23:32,510 UTC [3453372] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-12 11:23:32,510 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_surface_map 2023-05-12 11:23:32,510 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/thetao matches ['diag_surface_maps_vs_WOA/thetao'] 2023-05-12 11:23:32,510 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-12 11:23:32,510 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-12 11:23:32,511 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-12 11:23:32,511 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-12 11:23:32,511 UTC [3453372] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-12 11:23:32,511 UTC [3453372] INFO esmvalcore._recipe.recipe:1281 These tasks will be executed: diag_surface_maps_vs_WOA/so, diag_surface_maps_vs_WOA/Global_Ocean_surface_map, diag_surface_maps_vs_WOA/si, diag_surface_maps_vs_WOA/no3, diag_surface_maps_vs_WOA/areacello, diag_surface_maps_vs_WOA/o2, diag_surface_maps_vs_WOA/thetao 2023-05-12 11:23:32,514 UTC [3453372] DEBUG esmvalcore._main:120 Recipe summary: DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/thetao order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None 2023-05-12 11:23:32,530 UTC [3453372] INFO esmvalcore._recipe.recipe:1344 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/recipe_ocean_bgc_filled.yml 2023-05-12 11:23:32,530 UTC [3453372] INFO esmvalcore._task:746 Running 7 tasks using 7 processes 2023-05-12 11:23:32,582 UTC [3453511] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/thetao in process [3453511] 2023-05-12 11:23:32,583 UTC [3453512] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/so in process [3453512] 2023-05-12 11:23:32,583 UTC [3453513] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/no3 in process [3453513] 2023-05-12 11:23:32,583 UTC [3453514] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/si in process [3453514] 2023-05-12 11:23:32,584 UTC [3453515] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/o2 in process [3453515] 2023-05-12 11:23:32,584 UTC [3453516] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/areacello in process [3453516] 2023-05-12 11:23:32,610 UTC [3453516] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,610 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,611 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:23:32,612 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,612 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,613 UTC [3453516] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:23:32,654 UTC [3453516] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-12 11:23:32,654 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:32,656 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:23:32,657 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:32,658 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-12 11:23:32,658 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:32,659 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-12 11:23:32,659 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:32,660 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-12 11:23:32,660 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:32,661 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-12 11:23:32,661 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:32,661 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:32,662 UTC [3453516] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:32,662 UTC [3453516] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-12 11:23:32,663 UTC [3453516] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-12 11:23:32,679 UTC [3453372] INFO esmvalcore._task:778 Progress: 6 tasks running, 1 tasks waiting for ancestors, 0/7 done 2023-05-12 11:23:32,685 UTC [3453514] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:23:32,685 UTC [3453514] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-12 11:23:32,685 UTC [3453514] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,686 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,686 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,687 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,687 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,687 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,687 UTC [3453514] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:23:32,694 UTC [3453513] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:23:32,695 UTC [3453513] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-12 11:23:32,695 UTC [3453513] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,696 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,696 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,697 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,697 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,697 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,697 UTC [3453513] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:23:32,708 UTC [3453515] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:23:32,708 UTC [3453515] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-12 11:23:32,709 UTC [3453515] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,709 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,710 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:32,711 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,711 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,712 UTC [3453515] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:32,729 UTC [3453514] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:23:32,729 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,729 UTC [3453514] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:23:32,739 UTC [3453513] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:23:32,739 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,739 UTC [3453513] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:23:32,741 UTC [3453511] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:23:32,741 UTC [3453511] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-12 11:23:32,742 UTC [3453511] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,742 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,743 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,743 UTC [3453514] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-12 11:23:32,743 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:32,744 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,744 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,744 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,744 UTC [3453511] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-12 11:23:32,747 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,749 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:32,751 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-12 11:23:32,753 UTC [3453513] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-12 11:23:32,753 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:32,756 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,755 UTC [3453514] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:23:32,757 UTC [3453512] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-12 11:23:32,757 UTC [3453512] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-12 11:23:32,758 UTC [3453512] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:32,758 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:32,759 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:32,759 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,759 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,760 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:32,760 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,760 UTC [3453512] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,761 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-12 11:23:32,759 UTC [3453514] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:23:32,761 UTC [3453514] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:23:32,763 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:32,764 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:23:32,765 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:32,765 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:23:32,764 UTC [3453513] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:23:32,771 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:32,769 UTC [3453513] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:23:32,772 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,772 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:32,771 UTC [3453513] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:23:32,773 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:32,773 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:23:32,773 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:32,773 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:23:32,774 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:32,774 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:32,774 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:32,774 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:32,775 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:23:32,777 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:32,778 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:32,780 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:32,781 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:32,782 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:32,783 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:32,783 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:23:32,783 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:32,784 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:32,784 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:32,784 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:32,784 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:32,786 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:32,786 UTC [3453511] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-12 11:23:32,787 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,787 UTC [3453511] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-12 11:23:32,787 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:32,788 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:32,788 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-12 11:23:32,788 UTC [3453514] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-12 11:23:32,793 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:32,794 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:32,796 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:32,798 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-12 11:23:32,799 UTC [3453513] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-12 11:23:32,800 UTC [3453511] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-12 11:23:32,800 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:32,802 UTC [3453512] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,802 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:32,802 UTC [3453512] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,804 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,806 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:32,809 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-12 11:23:32,812 UTC [3453511] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:23:32,815 UTC [3453512] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,815 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:32,816 UTC [3453511] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:23:32,819 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,819 UTC [3453511] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:23:32,820 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:32,820 UTC [3453512] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,821 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-12 11:23:32,821 UTC [3453512] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-12 11:23:32,822 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:32,822 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:32,823 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:23:32,824 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-12 11:23:32,828 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:32,829 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,829 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:32,827 UTC [3453512] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:23:32,830 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-12 11:23:32,830 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:32,831 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:32,831 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:32,832 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:32,831 UTC [3453512] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:23:32,834 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:32,835 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:32,834 UTC [3453512] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:23:32,835 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:32,836 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:23:32,837 UTC [3453512] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-12 11:23:32,837 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:32,838 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:23:32,840 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:32,841 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:32,843 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:32,843 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:32,844 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-12 11:23:32,845 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:32,845 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-12 11:23:32,846 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:23:32,846 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:32,847 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:32,847 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:32,848 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:32,850 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:32,851 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:32,857 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:32,858 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:32,860 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:32,861 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-12 11:23:32,889 UTC [3453512] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-12 11:23:32,889 UTC [3453511] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-12 11:23:33,137 UTC [3453514] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-12 11:23:33,137 UTC [3453514] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:33,138 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:33,138 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,139 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:33,139 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:33,139 UTC [3453514] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:33,242 UTC [3453511] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-12 11:23:33,242 UTC [3453513] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:23:33,242 UTC [3453511] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:33,242 UTC [3453513] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:33,242 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:33,242 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:33,243 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:33,243 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,244 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:33,244 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:33,244 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:33,244 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:33,244 UTC [3453511] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:33,244 UTC [3453513] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:33,256 UTC [3453516] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/areacello (priority 6) in 0:00:00.672144 2023-05-12 11:23:33,310 UTC [3453512] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-12 11:23:33,311 UTC [3453512] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:33,311 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:33,311 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:33,312 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:33,312 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:33,312 UTC [3453512] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:33,321 UTC [3453515] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:33,321 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:33,324 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,327 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:33,329 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:23:33,329 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:33,330 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:23:33,331 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:33,332 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:23:33,337 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:33,338 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,338 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:33,339 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:23:33,340 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:33,340 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:33,340 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:33,341 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:33,381 UTC [3453372] INFO esmvalcore._task:778 Progress: 5 tasks running, 1 tasks waiting for ancestors, 1/7 done 2023-05-12 11:23:33,764 UTC [3453513] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:33,764 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:33,766 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,768 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:33,770 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:23:33,770 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:33,771 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:23:33,772 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:33,772 UTC [3453514] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-12 11:23:33,772 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:33,773 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:23:33,774 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,776 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:33,776 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:33,777 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,777 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:33,778 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-12 11:23:33,778 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-12 11:23:33,778 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:33,778 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:33,779 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:23:33,779 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:33,779 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:33,780 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:33,780 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:33,781 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:23:33,784 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:33,785 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-12 11:23:33,786 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:33,786 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-12 11:23:33,787 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:33,788 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:33,788 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:33,789 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:34,604 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:34,605 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:34,618 UTC [3453514] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:23:34,618 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:34,619 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:34,630 UTC [3453514] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:34,632 UTC [3453514] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-12 11:23:34,632 UTC [3453514] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-12 11:23:34,636 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:34,637 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:34,651 UTC [3453515] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:23:34,651 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:34,652 UTC [3453514] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/si (priority 4) in 0:00:02.068952 2023-05-12 11:23:34,653 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:34,664 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:34,665 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:34,665 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:34,668 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-12 11:23:34,668 UTC [3453515] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-12 11:23:34,678 UTC [3453513] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:23:34,678 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:34,679 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:34,690 UTC [3453513] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:34,692 UTC [3453513] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-12 11:23:34,692 UTC [3453513] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-12 11:23:34,713 UTC [3453513] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/no3 (priority 3) in 0:00:02.129722 2023-05-12 11:23:34,729 UTC [3453515] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-12 11:23:34,730 UTC [3453515] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-12 11:23:34,730 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-12 11:23:34,730 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:34,731 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:34,731 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-12 11:23:34,731 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:34,731 UTC [3453515] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:23:34,749 UTC [3453515] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:23:34,749 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-12 11:23:34,749 UTC [3453515] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:23:34,767 UTC [3453515] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-12 11:23:34,767 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:34,770 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:34,772 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:34,774 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-12 11:23:34,777 UTC [3453515] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-12 11:23:34,783 UTC [3453372] INFO esmvalcore._task:778 Progress: 4 tasks running, 1 tasks waiting for ancestors, 2/7 done 2023-05-12 11:23:34,781 UTC [3453515] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-12 11:23:34,784 UTC [3453515] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-12 11:23:34,785 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:34,786 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:23:34,787 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:34,788 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-12 11:23:34,790 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:34,791 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-12 11:23:34,792 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:34,792 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-12 11:23:34,793 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:34,793 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:34,793 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:34,794 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:34,796 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:34,797 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:34,802 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:34,803 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:34,804 UTC [3453515] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:34,807 UTC [3453515] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-12 11:23:34,807 UTC [3453515] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-12 11:23:34,855 UTC [3453515] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/o2 (priority 5) in 0:00:02.270576 2023-05-12 11:23:34,856 UTC [3453512] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:34,856 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:34,858 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:34,861 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:34,863 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-12 11:23:34,863 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:34,864 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:23:34,865 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:34,866 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:23:34,869 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:34,870 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:34,870 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:34,871 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-12 11:23:34,871 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:34,872 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:34,872 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:34,873 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:34,883 UTC [3453372] INFO esmvalcore._task:778 Progress: 3 tasks running, 1 tasks waiting for ancestors, 3/7 done 2023-05-12 11:23:34,976 UTC [3453511] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-12 11:23:34,976 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-12 11:23:34,978 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:34,981 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-12 11:23:34,983 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-12 11:23:34,983 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-12 11:23:34,984 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-12 11:23:34,984 UTC [3453372] INFO esmvalcore._task:778 Progress: 2 tasks running, 1 tasks waiting for ancestors, 4/7 done 2023-05-12 11:23:34,985 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-12 11:23:34,986 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-12 11:23:34,989 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-12 11:23:34,990 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-12 11:23:34,990 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-12 11:23:34,991 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-12 11:23:34,991 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-12 11:23:34,992 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-12 11:23:34,992 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-12 11:23:34,993 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-12 11:23:52,308 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:52,309 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:52,331 UTC [3453511] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:23:52,332 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:52,333 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:52,344 UTC [3453511] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:52,346 UTC [3453511] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-12 11:23:52,346 UTC [3453511] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-12 11:23:52,368 UTC [3453511] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/thetao (priority 1) in 0:00:19.785610 2023-05-12 11:23:52,505 UTC [3453372] INFO esmvalcore._task:778 Progress: 1 tasks running, 1 tasks waiting for ancestors, 5/7 done 2023-05-12 11:23:56,677 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-12 11:23:56,679 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-12 11:23:56,704 UTC [3453512] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-12 11:23:56,704 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-12 11:23:56,706 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-12 11:23:56,717 UTC [3453512] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-12 11:23:56,718 UTC [3453512] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-12 11:23:56,719 UTC [3453512] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-12 11:23:56,743 UTC [3453512] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/so (priority 2) in 0:00:24.159940 2023-05-12 11:23:56,810 UTC [3453372] INFO esmvalcore._task:778 Progress: 0 tasks running, 1 tasks waiting for ancestors, 6/7 done 2023-05-12 11:23:56,826 UTC [3453517] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_surface_map in process [3453517] 2023-05-12 11:23:56,830 UTC [3453517] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml'] 2023-05-12 11:23:56,830 UTC [3453517] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-12 11:23:56,830 UTC [3453517] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:23:56,830 UTC [3453517] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:23:56,830 UTC [3453517] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-12 11:23:56,830 UTC [3453517] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/log.txt 2023-05-12 11:23:56,830 UTC [3453517] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml 2023-05-12 11:23:56,911 UTC [3453372] INFO esmvalcore._task:778 Progress: 1 tasks running, 0 tasks waiting for ancestors, 6/7 done 2023-05-12 11:24:22,906 UTC [3453517] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-12 11:24:22,907 UTC [3453517] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-12 11:24:22,908 UTC [3453517] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-12 11:24:22,908 UTC [3453517] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-12 11:24:23,106 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,106 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,106 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,106 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,150 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,150 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,150 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,150 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,197 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,197 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,197 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,197 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,241 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,241 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,241 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,241 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,285 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,285 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,285 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,286 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,329 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,329 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,329 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,329 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,370 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,370 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,370 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,370 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,412 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,412 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,412 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,412 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,457 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,457 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,457 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,457 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,501 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,501 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,501 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,501 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,546 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-12 11:24:23,546 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-12 11:24:23,546 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-12 11:24:23,546 UTC [3453517] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-12 11:24:23,584 UTC [3453517] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_surface_map took 0.7 seconds 2023-05-12 11:24:23,584 UTC [3453517] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_surface_map (priority 0) in 0:00:26.757951 2023-05-12 11:24:23,642 UTC [3453372] INFO esmvalcore._task:778 Progress: 0 tasks running, 0 tasks waiting for ancestors, 7/7 done 2023-05-12 11:24:23,642 UTC [3453372] INFO esmvalcore._task:783 Successfully completed all tasks. 2023-05-12 11:24:23,693 UTC [3453372] INFO esmvalcore._recipe.recipe:1309 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/run/recipe_ocean_bgc_filled.yml 2023-05-12 11:24:23,850 UTC [3453372] INFO esmvalcore.experimental.recipe_output:205 Wrote recipe output to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230512_112331/index.html 2023-05-12 11:24:23,850 UTC [3453372] INFO esmvalcore._main:125 Ending the Earth System Model Evaluation Tool at time: 2023-05-12 11:24:23 UTC 2023-05-12 11:24:23,850 UTC [3453372] INFO esmvalcore._main:128 Time for running the recipe was: 0:00:51.476112 2023-05-12 11:24:23,961 UTC [3453372] INFO esmvalcore._task:126 Maximum memory used (estimate): 9.9 GB 2023-05-12 11:24:23,962 UTC [3453372] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-12 11:24:23,963 UTC [3453372] INFO esmvalcore._main:453 Run was successful