2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:495 ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! 2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:496 Package versions 2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:497 ---------------- 2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:498 ESMValCore: 2.8.0 2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:500 ESMValTool: 2.8.0 2023-05-11 21:33:49,289 UTC [3282027] INFO esmvalcore._main:501 ---------------- 2023-05-11 21:33:49,290 UTC [3282027] INFO esmvalcore._main:502 Using config file /nird/home/yanchun/.esmvaltool/config-NS9560K.yml 2023-05-11 21:33:49,290 UTC [3282027] INFO esmvalcore._main:503 Writing program log files to: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/main_log.txt /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/main_log_debug.txt 2023-05-11 21:33:49,868 UTC [3282027] INFO esmvalcore._main:85 Starting the Earth System Model Evaluation Tool at time: 2023-05-11 21:33:49 UTC 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:89 ---------------------------------------------------------------------- 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:90 RECIPE = /nird/home/yanchun/diagnostics/noresmvaltool/esmvaltool/tested_recipes/recipe_ocean_bgc.yml 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:91 RUNDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:92 WORKDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:93 PREPROCDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:94 PLOTDIR = /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots 2023-05-11 21:33:49,869 UTC [3282027] INFO esmvalcore._main:95 ---------------------------------------------------------------------- 2023-05-11 21:33:49,871 UTC [3282027] INFO esmvalcore._main:98 Running tasks using at most 8 processes 2023-05-11 21:33:49,871 UTC [3282027] INFO esmvalcore._main:100 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. 2023-05-11 21:33:49,871 UTC [3282027] INFO esmvalcore._main:103 If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. 2023-05-11 21:33:49,872 UTC [3282027] DEBUG esmvalcore._recipe.check:52 Checking recipe against schema /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe_schema.yml 2023-05-11 21:33:50,008 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,009 UTC [3282027] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-fx.yml 2023-05-11 21:33:50,009 UTC [3282027] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-institutes.yml 2023-05-11 21:33:50,037 UTC [3282027] DEBUG esmvalcore.config._config:48 Loading extra facets from /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/config/extra_facets/cmip5-product.yml 2023-05-11 21:33:50,044 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,051 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,051 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,052 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 21:33:50,053 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,053 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,053 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,054 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,060 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,060 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,060 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 21:33:50,060 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,061 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,061 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,061 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,065 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,065 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,066 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 21:33:50,066 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,067 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,067 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,068 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,072 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,072 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,072 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_volcello[_.]*nc 2023-05-11 21:33:50,072 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: volcello, *, *: ignoring supplementary variable 'volcello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,072 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,073 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 21:33:50,073 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,077 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,077 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,077 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 21:33:50,078 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,082 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,082 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,082 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 21:33:50,083 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/volcello/volcello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,087 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0: Dataset: volcello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: volcello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,087 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: volcello, fx, r0i0p0 2023-05-11 21:33:50,087 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,087 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,092 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,092 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,092 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable intpp in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,093 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,097 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,098 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,098 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,098 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,103 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,103 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,103 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,103 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,104 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,105 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,106 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,106 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,106 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,107 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,112 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,112 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,112 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,113 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,113 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,113 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,113 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,118 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,118 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,118 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,119 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: so, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,119 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,119 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,119 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,124 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,124 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,125 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,125 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,125 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,125 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,125 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,130 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,130 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,131 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,131 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,131 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,131 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,132 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,136 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,136 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,137 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,137 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,137 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,137 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,138 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,138 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,139 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,139 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,140 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,140 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable mfo in diagnostic diag_timeseries_scalars 2023-05-11 21:33:50,140 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: mfo, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,141 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,141 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,146 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,146 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,146 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,146 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: thetao, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,146 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,147 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,147 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,152 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,152 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,152 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,152 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: so, Omon, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,153 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,153 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,153 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,158 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,158 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,158 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,158 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: no3, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,159 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,159 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,159 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,164 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,164 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,164 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,164 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: o2, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,165 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,165 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,165 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,170 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,170 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,170 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_*_fx_areacello[_.]*nc 2023-05-11 21:33:50,170 UTC [3282027] INFO esmvalcore.dataset:314 For Dataset: si, Oyr, OBS, WOA, 2013v2, supplementaries: areacello, *, *: ignoring supplementary variable 'areacello', unable to expand wildcards 'mip', 'version'. 2023-05-11 21:33:50,171 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,171 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_profile_no_obs 2023-05-11 21:33:50,171 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,176 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,176 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,176 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_profile_no_obs 2023-05-11 21:33:50,176 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,181 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,181 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,181 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable talk in diagnostic diag_profile_no_obs 2023-05-11 21:33:50,182 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9034K/CMIP5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/*/HadGEM2-ES/*/fx/ocean/fx/*/*/areacello/areacello_fx_HadGEM2-ES_*_**.nc 2023-05-11 21:33:50,186 UTC [3282027] DEBUG esmvalcore.dataset:355 List of all supplementary datasets found for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0: Dataset: areacello, fx, CMIP5, HadGEM2-ES, abrupt4xCO2, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, esmHistorical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 Dataset: areacello, fx, CMIP5, HadGEM2-ES, piControl, r0i0p0 2023-05-11 21:33:50,186 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, supplementaries: areacello, fx, r0i0p0 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,187 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,188 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,189 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,189 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,190 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,190 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,191 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,191 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable intpp in diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable fgco2 in diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: fgco2, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,192 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,193 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable areacello in diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,193 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,194 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,194 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,195 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,195 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable thetao in diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable so in diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,196 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable no3 in diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable si in diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable o2 in diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,197 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable chl in diagnostic diag_transect_no_data 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:344 Populating list of datasets for variable dfe in diagnostic diag_transect_no_data 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.to_datasets:368 Found Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1014 Retrieving diagnostics from recipe 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 21:33:50,198 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_timeseries_scalars 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_profile_no_obs 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,199 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1042 Setting script for diagnostic diag_transect_no_data 2023-05-11 21:33:50,200 UTC [3282027] INFO esmvalcore._recipe.recipe:1232 Creating tasks from recipe 2023-05-11 21:33:50,200 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_volume_average_vs_WOA 2023-05-11 21:33:50,200 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:33:50,200 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/thetao 2023-05-11 21:33:50,200 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'thetao' 2023-05-11 21:33:50,201 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,204 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,206 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,206 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,206 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,207 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 21:33:50,208 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:50,208 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,209 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/thetao created. 2023-05-11 21:33:50,209 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:50,209 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/no3 2023-05-11 21:33:50,209 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'no3' 2023-05-11 21:33:50,210 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,211 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,211 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,212 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,212 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,212 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 21:33:50,213 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,213 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,214 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/no3 created. 2023-05-11 21:33:50,214 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:50,214 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/o2 2023-05-11 21:33:50,215 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'o2' 2023-05-11 21:33:50,215 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,216 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,217 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,217 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,217 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,218 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 21:33:50,218 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:50,219 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,220 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/o2 created. 2023-05-11 21:33:50,220 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:50,220 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_vs_WOA/si 2023-05-11 21:33:50,220 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'si' 2023-05-11 21:33:50,221 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,222 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,222 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,222 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,223 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function volume_statistics works best when at least one supplementary variable of ['volcello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_volume_average_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_timeseries_global_volume_average', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,223 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 21:33:50,224 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,224 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,225 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_vs_WOA/si created. 2023-05-11 21:33:50,225 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:50,225 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_volume_average_no_obs 2023-05-11 21:33:50,225 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 21:33:50,225 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/chl 2023-05-11 21:33:50,225 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'chl' 2023-05-11 21:33:50,226 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,227 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,228 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,228 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,228 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/chl created. 2023-05-11 21:33:50,229 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,229 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/dfe 2023-05-11 21:33:50,229 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'dfe' 2023-05-11 21:33:50,229 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,230 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,231 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,231 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,232 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/dfe created. 2023-05-11 21:33:50,232 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:50,232 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_volume_average_no_obs/talk 2023-05-11 21:33:50,232 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_global_volume_average' task for variable 'talk' 2023-05-11 21:33:50,233 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,234 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,234 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,234 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: volcello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,235 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_volume_average_no_obs/talk created. 2023-05-11 21:33:50,235 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_volume_average_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:50,235 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_surface_average_no_obs 2023-05-11 21:33:50,235 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 21:33:50,235 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/talk 2023-05-11 21:33:50,235 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'talk' 2023-05-11 21:33:50,236 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,237 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,238 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,238 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,239 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/talk created. 2023-05-11 21:33:50,239 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:50,239 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/intpp 2023-05-11 21:33:50,239 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_2D' task for variable 'intpp' 2023-05-11 21:33:50,239 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,241 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,241 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable intpp of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,241 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,242 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/intpp created. 2023-05-11 21:33:50,242 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/intpp will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:33:50,242 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/chl 2023-05-11 21:33:50,242 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'chl' 2023-05-11 21:33:50,243 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,244 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,244 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,244 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,245 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/chl created. 2023-05-11 21:33:50,245 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,245 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_no_obs/areacello 2023-05-11 21:33:50,246 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 21:33:50,246 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,247 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,247 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,248 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,249 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,249 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 21:33:50,249 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_no_obs/areacello created. 2023-05-11 21:33:50,249 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_no_obs/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:50,249 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_surface_average_vs_WOA 2023-05-11 21:33:50,249 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:33:50,250 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/thetao 2023-05-11 21:33:50,250 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'thetao' 2023-05-11 21:33:50,250 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,253 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,253 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,253 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,254 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,254 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 21:33:50,255 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:50,255 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,256 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/thetao created. 2023-05-11 21:33:50,256 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:50,256 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/so 2023-05-11 21:33:50,257 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'so' 2023-05-11 21:33:50,257 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,260 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,260 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,261 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,261 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'so', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'so', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Salinity', 'modeling_realm': ['ocean'], 'original_short_name': 'so', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_salinity', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'psu', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,261 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 21:33:50,262 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:50,262 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,264 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/so created. 2023-05-11 21:33:50,264 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:50,264 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/no3 2023-05-11 21:33:50,264 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'no3' 2023-05-11 21:33:50,264 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,265 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,266 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,266 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,266 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,267 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 21:33:50,267 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,268 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,269 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/no3 created. 2023-05-11 21:33:50,269 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:50,269 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/o2 2023-05-11 21:33:50,269 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'o2' 2023-05-11 21:33:50,270 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,271 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,271 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,271 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,272 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,272 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 21:33:50,273 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:50,273 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,275 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/o2 created. 2023-05-11 21:33:50,275 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:50,275 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/si 2023-05-11 21:33:50,275 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_Surface_average_timeseries_3D' task for variable 'si' 2023-05-11 21:33:50,275 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,276 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,277 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,277 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,277 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_timeseries_surface_average_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_global_Surface_average_timeseries_3D', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,278 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 21:33:50,278 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,278 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,280 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/si created. 2023-05-11 21:33:50,280 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:50,280 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_surface_average_vs_WOA/areacello 2023-05-11 21:33:50,280 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 21:33:50,281 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,281 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,282 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,282 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,283 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,283 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 21:33:50,284 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_surface_average_vs_WOA/areacello created. 2023-05-11 21:33:50,284 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_surface_average_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:50,284 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_timeseries_scalars 2023-05-11 21:33:50,284 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_timeseries_scalars/Scalar_timeseries 2023-05-11 21:33:50,284 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_timeseries_scalars/mfo 2023-05-11 21:33:50,284 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_timeseries_scalar' task for variable 'mfo' 2023-05-11 21:33:50,285 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,286 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable mfo of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 21:33:50,286 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: mfo, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,287 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_timeseries_scalars/mfo created. 2023-05-11 21:33:50,287 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_timeseries_scalars/mfo will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc 2023-05-11 21:33:50,287 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_profile_vs_WOA 2023-05-11 21:33:50,287 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 21:33:50,287 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/thetao 2023-05-11 21:33:50,287 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'thetao' 2023-05-11 21:33:50,288 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,290 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,291 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,291 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,291 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'thetao', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'thetao', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Potential Temperature', 'modeling_realm': ['ocean'], 'original_short_name': 'thetao', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_potential_temperature', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'K', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,292 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 21:33:50,293 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:50,293 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,294 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/thetao created. 2023-05-11 21:33:50,294 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:50,294 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/so 2023-05-11 21:33:50,294 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'so' 2023-05-11 21:33:50,295 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,298 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,299 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,299 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,299 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'so', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Omon', 'short_name': 'so', 'alias': 'OBS', 'frequency': 'mon', 'long_name': 'Sea Water Salinity', 'modeling_realm': ['ocean'], 'original_short_name': 'so', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'sea_water_salinity', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'psu', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,300 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 21:33:50,301 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:50,301 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,302 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/so created. 2023-05-11 21:33:50,302 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:50,302 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/no3 2023-05-11 21:33:50,302 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'no3' 2023-05-11 21:33:50,303 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,304 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,305 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,305 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,305 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'no3', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'no3', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Nitrate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'no3', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_nitrate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,306 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 21:33:50,306 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,306 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,307 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/no3 created. 2023-05-11 21:33:50,308 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:50,308 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/o2 2023-05-11 21:33:50,308 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'o2' 2023-05-11 21:33:50,308 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,309 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,310 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,310 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,310 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'o2', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'o2', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Oxygen Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'o2', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,311 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 21:33:50,311 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:50,311 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,313 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/o2 created. 2023-05-11 21:33:50,313 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:50,313 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_vs_WOA/si 2023-05-11 21:33:50,313 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'si' 2023-05-11 21:33:50,313 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,314 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,315 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,315 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,315 UTC [3282027] WARNING esmvalcore._recipe.check:204 Preprocessor function area_statistics works best when at least one supplementary variable of ['areacella', 'areacello'] is defined in the recipe for Dataset: {'diagnostic': 'diag_profile_vs_WOA', 'variable_group': 'si', 'dataset': 'WOA', 'project': 'OBS', 'mip': 'Oyr', 'short_name': 'si', 'alias': 'OBS', 'frequency': 'yr', 'long_name': 'Dissolved Silicate Concentration', 'modeling_realm': ['ocnBgchem'], 'original_short_name': 'si', 'preprocessor': 'prep_global_profile', 'recipe_dataset_index': 1, 'standard_name': 'mole_concentration_of_silicate_in_sea_water', 'tier': 2, 'timerange': '2000/2000', 'type': 'clim', 'units': 'mol m-3', 'version': '2013v2'} session: 'recipe_ocean_bgc_20230511_213349'. 2023-05-11 21:33:50,316 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 21:33:50,316 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,317 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,318 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_vs_WOA/si created. 2023-05-11 21:33:50,318 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:50,318 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_profile_no_obs 2023-05-11 21:33:50,318 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:33:50,318 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/chl 2023-05-11 21:33:50,318 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'chl' 2023-05-11 21:33:50,319 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,320 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,320 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,320 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,321 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/chl created. 2023-05-11 21:33:50,321 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,321 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/dfe 2023-05-11 21:33:50,321 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'dfe' 2023-05-11 21:33:50,322 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,323 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,324 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,324 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,325 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/dfe created. 2023-05-11 21:33:50,325 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:50,325 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_profile_no_obs/talk 2023-05-11 21:33:50,325 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_global_profile' task for variable 'talk' 2023-05-11 21:33:50,325 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,326 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,327 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable talk of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,327 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: talk, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916, supplementaries: areacello, fx, r0i0p0, v20130612 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_profile_no_obs/talk created. 2023-05-11 21:33:50,328 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_profile_no_obs/talk will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_vs_WOA 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/thetao 2023-05-11 21:33:50,328 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'thetao' 2023-05-11 21:33:50,329 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,331 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,331 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,332 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 21:33:50,332 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:50,332 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,334 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/thetao created. 2023-05-11 21:33:50,334 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:50,334 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/so 2023-05-11 21:33:50,334 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'so' 2023-05-11 21:33:50,335 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,337 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,337 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,337 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 21:33:50,338 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:50,338 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,340 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/so created. 2023-05-11 21:33:50,340 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:50,340 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/no3 2023-05-11 21:33:50,340 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'no3' 2023-05-11 21:33:50,340 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,341 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,341 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,342 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 21:33:50,342 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,342 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,344 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/no3 created. 2023-05-11 21:33:50,344 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:50,344 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/si 2023-05-11 21:33:50,344 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'si' 2023-05-11 21:33:50,345 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,345 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,345 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,346 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 21:33:50,346 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,346 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,348 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/si created. 2023-05-11 21:33:50,348 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:50,348 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/o2 2023-05-11 21:33:50,348 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_regrid_3D' task for variable 'o2' 2023-05-11 21:33:50,349 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,350 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,350 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,350 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 21:33:50,351 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:50,351 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,352 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/o2 created. 2023-05-11 21:33:50,353 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:50,353 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_vs_WOA/areacello 2023-05-11 21:33:50,353 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 21:33:50,353 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,354 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,354 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,355 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,356 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,356 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 21:33:50,356 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_vs_WOA/areacello created. 2023-05-11 21:33:50,356 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_vs_WOA/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:50,356 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_surface_maps_no_data 2023-05-11 21:33:50,356 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 21:33:50,357 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/intpp 2023-05-11 21:33:50,357 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_2D' task for variable 'intpp' 2023-05-11 21:33:50,357 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,358 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable intpp of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:33:50,358 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: intpp, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,359 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/intpp created. 2023-05-11 21:33:50,359 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/intpp will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:33:50,359 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/fgco2 2023-05-11 21:33:50,359 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_2D' task for variable 'fgco2' 2023-05-11 21:33:50,359 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/*/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,360 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable fgco2 of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:33:50,360 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: fgco2, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,361 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/fgco2 created. 2023-05-11 21:33:50,361 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/fgco2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 21:33:50,361 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/chl 2023-05-11 21:33:50,361 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_3D' task for variable 'chl' 2023-05-11 21:33:50,362 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,362 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,363 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,363 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/chl created. 2023-05-11 21:33:50,364 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,364 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/dfe 2023-05-11 21:33:50,364 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_surface_map_3D' task for variable 'dfe' 2023-05-11 21:33:50,364 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,365 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,365 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,366 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/dfe created. 2023-05-11 21:33:50,366 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:50,366 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_surface_maps_no_data/areacello 2023-05-11 21:33:50,366 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'default' task for variable 'areacello' 2023-05-11 21:33:50,366 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r1i1p1/*/areacello/areacello_fx_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,367 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,368 UTC [3282027] INFO esmvalcore._recipe.to_datasets:186 Corrected wrong 'ensemble' from 'r1i1p1' to 'r0i0p0' for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0 2023-05-11 21:33:50,368 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/*/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0*.nc 2023-05-11 21:33:50,369 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable areacello of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,369 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: areacello, fx, CMIP5, HadGEM2-ES, historical, r0i0p0, v20130612 2023-05-11 21:33:50,370 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_surface_maps_no_data/areacello created. 2023-05-11 21:33:50,370 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_surface_maps_no_data/areacello will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:50,370 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_transect_vs_WOA 2023-05-11 21:33:50,370 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 21:33:50,370 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/thetao 2023-05-11 21:33:50,370 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'thetao' 2023-05-11 21:33:50,371 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,373 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,373 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,373 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao[_.]*nc 2023-05-11 21:33:50,374 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable thetao of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:50,374 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: thetao, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,376 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/thetao created. 2023-05-11 21:33:50,376 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/thetao will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:50,376 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/so 2023-05-11 21:33:50,376 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'so' 2023-05-11 21:33:50,377 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/*/so/so_Omon_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,379 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,379 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,379 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so[_.]*nc 2023-05-11 21:33:50,380 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable so of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:50,380 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: so, Omon, OBS, WOA, 2013v2 2023-05-11 21:33:50,382 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/so created. 2023-05-11 21:33:50,382 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/so will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:50,382 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/no3 2023-05-11 21:33:50,382 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'no3' 2023-05-11 21:33:50,382 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,383 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,383 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,384 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3[_.]*nc 2023-05-11 21:33:50,384 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable no3 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,384 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: no3, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,386 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/no3 created. 2023-05-11 21:33:50,386 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/no3 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:50,386 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/si 2023-05-11 21:33:50,386 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'si' 2023-05-11 21:33:50,387 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/si/si_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,387 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,388 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,388 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si[_.]*nc 2023-05-11 21:33:50,388 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable si of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,389 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: si, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,390 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/si created. 2023-05-11 21:33:50,391 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/si will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:50,391 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_vs_WOA/o2 2023-05-11 21:33:50,391 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'o2' 2023-05-11 21:33:50,391 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,392 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset CMIP5: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,392 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,392 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2[_.]*nc 2023-05-11 21:33:50,393 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable o2 of dataset OBS: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:50,393 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: o2, Oyr, OBS, WOA, 2013v2 2023-05-11 21:33:50,395 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_vs_WOA/o2 created. 2023-05-11 21:33:50,395 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_vs_WOA/o2 will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:50,395 UTC [3282027] INFO esmvalcore._recipe.recipe:1241 Creating tasks for diagnostic diag_transect_no_data 2023-05-11 21:33:50,395 UTC [3282027] INFO esmvalcore._recipe.recipe:1163 Creating diagnostic task diag_transect_no_data/Transects_no_data 2023-05-11 21:33:50,395 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_no_data/chl 2023-05-11 21:33:50,395 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'chl' 2023-05-11 21:33:50,396 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,396 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable chl of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,396 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: chl, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,398 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_no_data/chl created. 2023-05-11 21:33:50,398 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_no_data/chl will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,398 UTC [3282027] INFO esmvalcore._recipe.recipe:1216 Creating preprocessor task diag_transect_no_data/dfe 2023-05-11 21:33:50,398 UTC [3282027] INFO esmvalcore._recipe.recipe:849 Creating preprocessor 'prep_transect_AMT' task for variable 'dfe' 2023-05-11 21:33:50,398 UTC [3282027] DEBUG esmvalcore.local:458 Looking for files matching: /projects/NS9034K/CMIP5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9034K/CMIP5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/INPE/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output2/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/*/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1*.nc 2023-05-11 21:33:50,399 UTC [3282027] DEBUG esmvalcore._recipe.recipe:446 Using input files for variable dfe of dataset HadGEM2-ES: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,399 UTC [3282027] INFO esmvalcore._recipe.recipe:717 Found input files for Dataset: dfe, Oyr, CMIP5, HadGEM2-ES, historical, r1i1p1, v20110916 2023-05-11 21:33:50,400 UTC [3282027] INFO esmvalcore._recipe.recipe:873 PreprocessingTask diag_transect_no_data/dfe created. 2023-05-11 21:33:50,400 UTC [3282027] DEBUG esmvalcore._recipe.recipe:874 PreprocessingTask diag_transect_no_data/dfe will create the files: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:50,400 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_volume_average_vs_WOA script Global_Volume_Average_timeseries 2023-05-11 21:33:50,401 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/thetao matches ['diag_timeseries_volume_average_vs_WOA/thetao'] 2023-05-11 21:33:50,401 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/no3 matches ['diag_timeseries_volume_average_vs_WOA/no3'] 2023-05-11 21:33:50,401 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/o2 matches ['diag_timeseries_volume_average_vs_WOA/o2'] 2023-05-11 21:33:50,401 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_vs_WOA/si matches ['diag_timeseries_volume_average_vs_WOA/si'] 2023-05-11 21:33:50,401 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_volume_average_no_obs script Global_Volume_verage_timeseries 2023-05-11 21:33:50,402 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/chl matches ['diag_timeseries_volume_average_no_obs/chl'] 2023-05-11 21:33:50,402 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/dfe matches ['diag_timeseries_volume_average_no_obs/dfe'] 2023-05-11 21:33:50,402 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_volume_average_no_obs/talk matches ['diag_timeseries_volume_average_no_obs/talk'] 2023-05-11 21:33:50,402 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_surface_average_no_obs script Global_Volume_Average_timeseries 2023-05-11 21:33:50,402 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/talk matches ['diag_timeseries_surface_average_no_obs/talk'] 2023-05-11 21:33:50,403 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/intpp matches ['diag_timeseries_surface_average_no_obs/intpp'] 2023-05-11 21:33:50,403 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/chl matches ['diag_timeseries_surface_average_no_obs/chl'] 2023-05-11 21:33:50,403 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_no_obs/areacello matches ['diag_timeseries_surface_average_no_obs/areacello'] 2023-05-11 21:33:50,403 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_surface_average_vs_WOA script Global_Volume_Average_timeseries 2023-05-11 21:33:50,403 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/thetao matches ['diag_timeseries_surface_average_vs_WOA/thetao'] 2023-05-11 21:33:50,404 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/so matches ['diag_timeseries_surface_average_vs_WOA/so'] 2023-05-11 21:33:50,404 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/no3 matches ['diag_timeseries_surface_average_vs_WOA/no3'] 2023-05-11 21:33:50,404 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/o2 matches ['diag_timeseries_surface_average_vs_WOA/o2'] 2023-05-11 21:33:50,404 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/si matches ['diag_timeseries_surface_average_vs_WOA/si'] 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_surface_average_vs_WOA/areacello matches ['diag_timeseries_surface_average_vs_WOA/areacello'] 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_timeseries_scalars script Scalar_timeseries 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_timeseries_scalars/mfo matches ['diag_timeseries_scalars/mfo'] 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_profile_vs_WOA script Global_profile_vs_WOA 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/thetao matches ['diag_profile_vs_WOA/thetao'] 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/so matches ['diag_profile_vs_WOA/so'] 2023-05-11 21:33:50,405 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/no3 matches ['diag_profile_vs_WOA/no3'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/o2 matches ['diag_profile_vs_WOA/o2'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_vs_WOA/si matches ['diag_profile_vs_WOA/si'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_profile_no_obs script Global_profile_no_obs 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/chl matches ['diag_profile_no_obs/chl'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/dfe matches ['diag_profile_no_obs/dfe'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_profile_no_obs/talk matches ['diag_profile_no_obs/talk'] 2023-05-11 21:33:50,406 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_surface_map 2023-05-11 21:33:50,407 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/thetao matches ['diag_surface_maps_vs_WOA/thetao'] 2023-05-11 21:33:50,407 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-11 21:33:50,407 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-11 21:33:50,407 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-11 21:33:50,407 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_vs_WOA script Global_Ocean_model_vs_obs 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/thetao matches ['diag_surface_maps_vs_WOA/thetao'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/so matches ['diag_surface_maps_vs_WOA/so'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/no3 matches ['diag_surface_maps_vs_WOA/no3'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/si matches ['diag_surface_maps_vs_WOA/si'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/o2 matches ['diag_surface_maps_vs_WOA/o2'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_vs_WOA/areacello matches ['diag_surface_maps_vs_WOA/areacello'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_surface_maps_no_data script Global_Ocean_surface_map 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/intpp matches ['diag_surface_maps_no_data/intpp'] 2023-05-11 21:33:50,408 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/fgco2 matches ['diag_surface_maps_no_data/fgco2'] 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/chl matches ['diag_surface_maps_no_data/chl'] 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/dfe matches ['diag_surface_maps_no_data/dfe'] 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_surface_maps_no_data/areacello matches ['diag_surface_maps_no_data/areacello'] 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_transect_vs_WOA script Transects_vs_WOA 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/thetao matches ['diag_transect_vs_WOA/thetao'] 2023-05-11 21:33:50,409 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/so matches ['diag_transect_vs_WOA/so'] 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/no3 matches ['diag_transect_vs_WOA/no3'] 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/si matches ['diag_transect_vs_WOA/si'] 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_vs_WOA/o2 matches ['diag_transect_vs_WOA/o2'] 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1091 Linking tasks for diagnostic diag_transect_no_data script Transects_no_data 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_no_data/chl matches ['diag_transect_no_data/chl'] 2023-05-11 21:33:50,410 UTC [3282027] DEBUG esmvalcore._recipe.recipe:1100 Pattern diag_transect_no_data/dfe matches ['diag_transect_no_data/dfe'] 2023-05-11 21:33:50,410 UTC [3282027] INFO esmvalcore._recipe.recipe:1281 These tasks will be executed: diag_surface_maps_vs_WOA/si, diag_timeseries_volume_average_vs_WOA/si, diag_transect_vs_WOA/si, diag_timeseries_surface_average_no_obs/intpp, diag_timeseries_surface_average_vs_WOA/so, diag_surface_maps_vs_WOA/thetao, diag_surface_maps_no_data/fgco2, diag_timeseries_volume_average_vs_WOA/thetao, diag_timeseries_surface_average_vs_WOA/thetao, diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs, diag_timeseries_surface_average_vs_WOA/no3, diag_surface_maps_no_data/Global_Ocean_surface_map, diag_profile_no_obs/dfe, diag_transect_vs_WOA/o2, diag_profile_vs_WOA/thetao, diag_surface_maps_no_data/intpp, diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries, diag_transect_no_data/chl, diag_timeseries_volume_average_no_obs/chl, diag_timeseries_volume_average_vs_WOA/o2, diag_transect_no_data/dfe, diag_timeseries_surface_average_vs_WOA/si, diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries, diag_surface_maps_vs_WOA/Global_Ocean_surface_map, diag_timeseries_surface_average_no_obs/chl, diag_transect_vs_WOA/so, diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries, diag_surface_maps_vs_WOA/o2, diag_timeseries_scalars/mfo, diag_timeseries_volume_average_no_obs/dfe, diag_surface_maps_vs_WOA/areacello, diag_timeseries_surface_average_no_obs/talk, diag_profile_vs_WOA/o2, diag_surface_maps_vs_WOA/so, diag_surface_maps_no_data/chl, diag_profile_no_obs/talk, diag_timeseries_surface_average_vs_WOA/areacello, diag_timeseries_scalars/Scalar_timeseries, diag_surface_maps_vs_WOA/no3, diag_transect_vs_WOA/no3, diag_profile_vs_WOA/si, diag_profile_no_obs/chl, diag_profile_vs_WOA/Global_profile_vs_WOA, diag_timeseries_surface_average_vs_WOA/o2, diag_profile_no_obs/Global_profile_no_obs, diag_timeseries_surface_average_no_obs/areacello, diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries, diag_surface_maps_no_data/areacello, diag_transect_no_data/Transects_no_data, diag_transect_vs_WOA/thetao, diag_timeseries_volume_average_vs_WOA/no3, diag_profile_vs_WOA/no3, diag_profile_vs_WOA/so, diag_transect_vs_WOA/Transects_vs_WOA, diag_surface_maps_no_data/dfe, diag_timeseries_volume_average_no_obs/talk 2023-05-11 21:33:50,433 UTC [3282027] DEBUG esmvalcore._main:120 Recipe summary: DiagnosticTask: diag_profile_no_obs/Global_profile_no_obs script: ocean/diagnostic_profiles.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_no_obs/Global_profile_no_obs', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs', 'script': 'Global_profile_no_obs', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_profile_no_obs/Global_profile_no_obs'} ancestors: PreprocessingTask: diag_profile_no_obs/chl order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_no_obs/dfe order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_no_obs/talk order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_surface_average_vs_WOA/thetao order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/so order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/no3 order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/o2 order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/si order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries', 'script': 'Global_Volume_verage_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries'} ancestors: PreprocessingTask: diag_timeseries_volume_average_no_obs/chl order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_no_obs/dfe order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_no_obs/talk order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None DiagnosticTask: diag_transect_vs_WOA/Transects_vs_WOA script: ocean/diagnostic_transects.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_transect_vs_WOA/Transects_vs_WOA', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA', 'script': 'Transects_vs_WOA', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_transect_vs_WOA/Transects_vs_WOA'} ancestors: PreprocessingTask: diag_transect_vs_WOA/thetao order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/so order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/no3 order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/si order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_vs_WOA/o2 order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None DiagnosticTask: diag_transect_no_data/Transects_no_data script: ocean/diagnostic_transects.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_transect_no_data/Transects_no_data', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data', 'script': 'Transects_no_data', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_transect_no_data/Transects_no_data'} ancestors: PreprocessingTask: diag_transect_no_data/chl order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_transect_no_data/dfe order: ['load', 'climate_statistics', 'extract_region', 'regrid', 'extract_transect', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_region': {'end_latitude': 89.9, 'end_longitude': 345.0, 'start_latitude': -81.0, 'start_longitude': 320.0}, 'extract_transect': {'longitude': 332.0}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_timeseries_scalars/Scalar_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries', 'script': 'Scalar_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_scalars/Scalar_timeseries'} ancestors: PreprocessingTask: diag_timeseries_scalars/mfo order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc')}} ancestors: None DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs script: ocean/diagnostic_model_vs_obs.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs', 'script': 'Global_Ocean_model_vs_obs', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/thetao order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_volume_average_vs_WOA/thetao order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/no3 order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/o2 order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None PreprocessingTask: diag_timeseries_volume_average_vs_WOA/si order: ['load', 'volume_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}, 'volume_statistics': {'operator': 'mean'}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}, 'volume_statistics': {'operator': 'mean'}} ancestors: None DiagnosticTask: diag_surface_maps_vs_WOA/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_vs_WOA/thetao order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/so order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/no3 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/si order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/o2 order: ['load', 'extract_levels', 'climate_statistics', 'regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_vs_WOA/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_surface_maps_no_data/Global_Ocean_surface_map script: ocean/diagnostic_maps.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_no_data/Global_Ocean_surface_map', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map', 'script': 'Global_Ocean_surface_map', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_no_data/Global_Ocean_surface_map'} ancestors: PreprocessingTask: diag_surface_maps_no_data/intpp order: ['load', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/fgco2 order: ['load', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/chl order: ['load', 'extract_levels', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/dfe order: ['load', 'extract_levels', 'climate_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] settings: {'climate_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_surface_maps_no_data/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries script: ocean/diagnostic_timeseries.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries', 'script': 'Global_Volume_Average_timeseries', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries'} ancestors: PreprocessingTask: diag_timeseries_surface_average_no_obs/talk order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/intpp order: ['load', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/chl order: ['load', 'extract_levels', 'area_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'area_statistics': {'operator': 'mean'}, 'extract_levels': {'levels': [0.0], 'scheme': 'linear_extrapolate'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_timeseries_surface_average_no_obs/areacello order: ['load', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc')}} ancestors: None DiagnosticTask: diag_profile_vs_WOA/Global_profile_vs_WOA script: ocean/diagnostic_profiles.py settings: {'auxiliary_data_dir': PosixPath('/projects/NS9252K/share/esmvaltool/auxiliary_data'), 'log_level': 'info', 'observational_dataset': {'dataset': 'WOA', 'project': 'OBS'}, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_vs_WOA/Global_profile_vs_WOA', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_ocean_bgc.yml'), 'run_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA', 'script': 'Global_profile_vs_WOA', 'version': '2.8.0', 'work_dir': '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_profile_vs_WOA/Global_profile_vs_WOA'} ancestors: PreprocessingTask: diag_profile_vs_WOA/thetao order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/so order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/no3 order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/o2 order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc')}} ancestors: None PreprocessingTask: diag_profile_vs_WOA/si order: ['load', 'area_statistics', 'annual_statistics', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc')}} PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc input files: [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] settings: {'annual_statistics': {'operator': 'mean'}, 'area_statistics': {'operator': 'mean'}, 'load': {'callback': 'default'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc')}} ancestors: None 2023-05-11 21:33:50,497 UTC [3282027] INFO esmvalcore._recipe.recipe:1344 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/recipe_ocean_bgc_filled.yml 2023-05-11 21:33:50,498 UTC [3282027] INFO esmvalcore._task:746 Running 56 tasks using 8 processes 2023-05-11 21:33:50,563 UTC [3282169] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/thetao in process [3282169] 2023-05-11 21:33:50,564 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/no3 in process [3282170] 2023-05-11 21:33:50,564 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/o2 in process [3282171] 2023-05-11 21:33:50,565 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/si in process [3282172] 2023-05-11 21:33:50,565 UTC [3282173] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/chl in process [3282173] 2023-05-11 21:33:50,565 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/dfe in process [3282174] 2023-05-11 21:33:50,565 UTC [3282175] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/talk in process [3282175] 2023-05-11 21:33:50,566 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/talk in process [3282176] 2023-05-11 21:33:50,573 UTC [3282176] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:50,574 UTC [3282175] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,574 UTC [3282173] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,574 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,573 UTC [3282176] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:50,574 UTC [3282175] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:50,574 UTC [3282173] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:50,574 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,574 UTC [3282175] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,574 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:50,575 UTC [3282173] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,575 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,575 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,575 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,575 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,575 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,575 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,575 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,575 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,576 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,577 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,577 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,577 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,577 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,577 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,577 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,577 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,577 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,577 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,577 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,577 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,577 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,625 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,626 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:50,626 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,627 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,628 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,628 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,629 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,629 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,629 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,633 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,633 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:50,634 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,634 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,635 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,635 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,636 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,636 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,636 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,651 UTC [3282169] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,651 UTC [3282169] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:50,652 UTC [3282169] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,652 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,653 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:50,655 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,655 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,655 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,660 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 48 tasks waiting for ancestors, 0/56 done 2023-05-11 21:33:50,678 UTC [3282171] DEBUG esmvalcore.preprocessor:660 Running block ['volume_statistics'] 2023-05-11 21:33:50,679 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:50,680 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:50,681 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,681 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,684 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,684 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,684 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,770 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,770 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,773 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,775 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,777 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,777 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,777 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:50,777 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,778 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:50,779 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,780 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,780 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,783 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,784 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:50,784 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,785 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,785 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:50,786 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,786 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,786 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,787 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,787 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:50,787 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,788 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,788 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,788 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,788 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,792 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,793 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,793 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,794 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:50,795 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,795 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,795 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,795 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,795 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,797 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,797 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,799 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,799 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,801 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,801 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,801 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,801 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,801 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,802 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,802 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,803 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,803 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,803 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,804 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,804 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,804 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,804 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,804 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:50,805 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,805 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,806 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,806 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,806 UTC [3282175] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of talk. 2023-05-11 21:33:50,806 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,806 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:50,807 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,808 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,808 UTC [3282176] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 21:33:50,808 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:50,820 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,820 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,820 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,824 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,824 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,824 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,834 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:50,834 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,837 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:50,837 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,838 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,840 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,840 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,843 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:50,843 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,845 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:50,846 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:50,848 UTC [3282170] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:50,850 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:50,853 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:50,854 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,852 UTC [3282170] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:50,855 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:50,856 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,855 UTC [3282170] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:50,856 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,856 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:50,857 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:50,858 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,859 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:50,859 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,859 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,862 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,862 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,862 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,863 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,863 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,863 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:50,864 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,864 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:50,865 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,865 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,865 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,865 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,865 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:50,865 UTC [3282172] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 21:33:50,865 UTC [3282172] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 21:33:50,865 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:50,866 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,866 UTC [3282172] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 21:33:50,866 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,866 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:50,867 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,867 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,867 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:50,867 UTC [3282170] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 21:33:50,867 UTC [3282170] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 21:33:50,867 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:33:50,868 UTC [3282170] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 21:33:50,868 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,869 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,874 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,875 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,875 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,876 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:33:50,877 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,877 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,877 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,877 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,877 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,885 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,885 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,886 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,886 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,887 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,888 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,888 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,889 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,889 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,890 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,890 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,891 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,891 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,891 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,892 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,892 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,892 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:50,892 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,893 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:50,894 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,894 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,894 UTC [3282174] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of dfe. 2023-05-11 21:33:50,894 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,895 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,900 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,901 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_volume_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,901 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,902 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:50,902 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,903 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,903 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,903 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,903 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,912 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,912 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,914 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,914 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,916 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,916 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,916 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,917 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:50,917 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,917 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,918 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,918 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,919 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,919 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,920 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,921 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,921 UTC [3282173] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of chl. 2023-05-11 21:33:50,921 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,922 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,924 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:50,924 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,925 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:50,926 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,927 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,929 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:50,929 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,932 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,932 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:50,933 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:50,933 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,934 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:50,935 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,935 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,935 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,935 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,935 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,936 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,937 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:50,937 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,938 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:50,939 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:50,940 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:50,944 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,944 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,945 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,946 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,946 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:50,946 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,947 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,947 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:50,948 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,948 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,948 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:50,948 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,948 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:50,948 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:50,948 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,948 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,949 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,950 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,950 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,951 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,951 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,953 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,953 UTC [3282171] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of o2. 2023-05-11 21:33:50,953 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,957 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:50,958 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:50,959 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,960 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:50,961 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:50,961 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:50,962 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,962 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:50,963 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:50,963 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:50,964 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:50,964 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:50,966 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:50,966 UTC [3282169] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of thetao. 2023-05-11 21:33:50,966 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:50,981 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:51,038 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,133 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,149 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,185 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,247 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,368 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:51,370 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 21:33:51,371 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:51,382 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:51,384 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 21:33:51,384 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:51,449 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:51,450 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:51,451 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:51,452 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,453 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:51,454 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:51,454 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:51,468 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:51,469 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:51,470 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:51,471 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,473 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:51,474 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:51,474 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:51,518 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:51,518 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:51,520 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,522 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:51,522 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:51,524 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:51,524 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,526 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:51,526 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:51,527 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:51,527 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:51,528 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:51,529 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:51,529 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:51,529 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:51,530 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:51,531 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:51,531 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:51,533 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:51,534 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,534 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:51,535 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:51,535 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:51,535 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:51,536 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,536 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:51,536 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:51,536 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:51,536 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:51,536 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:51,537 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:51,538 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:51,538 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/volcello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,538 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:51,538 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:51,538 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:51,547 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:51,548 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:51,549 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:51,549 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:51,549 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,550 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:51,550 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,551 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:51,551 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:51,551 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:51,552 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:51,552 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:51,552 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:51,552 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:51,553 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:51,553 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,553 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:51,553 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:51,554 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'volcello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'volcello', standard_name = 'ocean_volume', long_name = 'Ocean Grid-Cell Volume', units = 'm3', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:51,554 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:51,554 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:51,555 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:51,555 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'volcello' 2023-05-11 21:33:51,555 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:51,556 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:51,557 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of si. 2023-05-11 21:33:51,557 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:51,557 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:51,557 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added volcello as cell measure in cube of no3. 2023-05-11 21:33:51,558 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:51,635 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,641 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,884 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:51,886 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 21:33:51,886 UTC [3282173] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:51,918 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:51,920 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 21:33:51,920 UTC [3282175] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:51,927 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:51,929 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 21:33:51,929 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:51,941 UTC [3282176] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 21:33:51,942 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:51,957 UTC [3282173] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/chl (priority 6) in 0:00:01.391515 2023-05-11 21:33:51,957 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:51,996 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:51,996 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:51,996 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:51,997 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:51,997 UTC [3282175] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/talk (priority 8) in 0:00:01.431108 2023-05-11 21:33:51,997 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:51,997 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:51,998 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:51,998 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:52,004 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,005 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,006 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 21:33:52,007 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 21:33:52,007 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:52,008 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:52,018 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:52,018 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,018 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:52,037 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:52,037 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,040 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,043 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,045 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:52,048 UTC [3282171] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:52,053 UTC [3282171] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,056 UTC [3282171] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:52,057 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,058 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:52,059 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,060 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:52,063 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,063 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,064 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 48 tasks waiting for ancestors, 1/56 done 2023-05-11 21:33:52,064 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,065 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:52,065 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,066 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,066 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:52,066 UTC [3282173] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/intpp in process [3282173] 2023-05-11 21:33:52,066 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:52,067 UTC [3282171] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 21:33:52,067 UTC [3282171] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 21:33:52,067 UTC [3282171] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 21:33:52,075 UTC [3282173] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics'] 2023-05-11 21:33:52,075 UTC [3282173] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:33:52,076 UTC [3282173] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,076 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,077 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/intpp_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,077 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,077 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,077 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:33:52,079 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/dfe (priority 7) in 0:00:01.513184 2023-05-11 21:33:52,080 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/talk (priority 10) in 0:00:01.513603 2023-05-11 21:33:52,095 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:33:52,095 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,097 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,110 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,111 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 21:33:52,111 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,112 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 21:33:52,114 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,115 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:52,120 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,122 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,122 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,123 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 21:33:52,123 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,124 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,124 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,124 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,124 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,132 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,132 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,133 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,134 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,135 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:52,135 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,136 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,136 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,137 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,137 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,138 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,138 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,140 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,140 UTC [3282173] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of intpp. 2023-05-11 21:33:52,140 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:52,157 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:52,164 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 47 tasks waiting for ancestors, 2/56 done 2023-05-11 21:33:52,166 UTC [3282175] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/chl in process [3282175] 2023-05-11 21:33:52,173 UTC [3282175] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,173 UTC [3282175] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:52,174 UTC [3282175] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,174 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,175 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,175 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,175 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,175 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:52,192 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,194 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc') 2023-05-11 21:33:52,195 UTC [3282173] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:33:52,200 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:52,200 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,202 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,206 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,207 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:52,208 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,208 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:52,210 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,211 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:52,214 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,215 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,215 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,216 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:52,217 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,217 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,217 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,217 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,217 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,223 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,224 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,224 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,225 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,226 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:52,226 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,226 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,227 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,228 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', thresholds = [0.1, 0.2, 0.5], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,228 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,228 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,229 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,230 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,230 UTC [3282175] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 21:33:52,230 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,245 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,265 UTC [3282027] INFO esmvalcore._task:778 Progress: 6 tasks running, 46 tasks waiting for ancestors, 4/56 done 2023-05-11 21:33:52,272 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/areacello in process [3282176] 2023-05-11 21:33:52,277 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries in process [3282174] 2023-05-11 21:33:52,277 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,277 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,278 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,278 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,279 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,279 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,281 UTC [3282174] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/settings.yml'] 2023-05-11 21:33:52,282 UTC [3282174] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:52,282 UTC [3282174] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 21:33:52,282 UTC [3282174] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 21:33:52,282 UTC [3282174] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries 2023-05-11 21:33:52,282 UTC [3282174] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/log.txt 2023-05-11 21:33:52,282 UTC [3282174] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/settings.yml 2023-05-11 21:33:52,287 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,287 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,288 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,289 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,290 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:52,290 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,291 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,291 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,292 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,292 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,293 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,293 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,294 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,294 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,295 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 21:33:52,295 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:52,316 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/areacello (priority 13) in 0:00:00.043469 2023-05-11 21:33:52,317 UTC [3282173] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/intpp (priority 11) in 0:00:00.251084 2023-05-11 21:33:52,336 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,338 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 21:33:52,338 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:52,362 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/o2 (priority 3) in 0:00:01.797024 2023-05-11 21:33:52,402 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,405 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 21:33:52,406 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:52,484 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/si (priority 4) in 0:00:01.919122 2023-05-11 21:33:52,539 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,542 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 21:33:52,542 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:52,566 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/no3 (priority 2) in 0:00:02.001684 2023-05-11 21:33:52,572 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 44 tasks waiting for ancestors, 4/56 done 2023-05-11 21:33:52,673 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 44 tasks waiting for ancestors, 5/56 done 2023-05-11 21:33:52,704 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/thetao in process [3282176] 2023-05-11 21:33:52,727 UTC [3282176] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,727 UTC [3282176] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:52,728 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,728 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,728 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,729 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,729 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,729 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:52,768 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:52,768 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,770 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,773 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,775 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:52,775 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,776 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:52,777 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,778 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:52,781 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,782 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:52,782 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,783 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:52,783 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,784 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,784 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,784 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,784 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,789 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,789 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,790 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,791 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,792 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:52,792 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,792 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,793 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,793 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,794 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,794 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,794 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,796 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,796 UTC [3282176] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 21:33:52,796 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,802 UTC [3282027] INFO esmvalcore._task:778 Progress: 4 tasks running, 43 tasks waiting for ancestors, 9/56 done 2023-05-11 21:33:52,805 UTC [3282173] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/so in process [3282173] 2023-05-11 21:33:52,806 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/no3 in process [3282171] 2023-05-11 21:33:52,806 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/o2 in process [3282172] 2023-05-11 21:33:52,807 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/si in process [3282170] 2023-05-11 21:33:52,810 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,822 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,822 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:52,822 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,822 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,823 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,823 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,823 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,823 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:52,824 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,824 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:52,824 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,824 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,825 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,826 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,826 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,826 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,826 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:52,847 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:52,848 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,848 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:52,853 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:52,853 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,855 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,859 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,862 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:52,862 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,863 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:52,865 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,866 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:52,868 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:52,868 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,870 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,872 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:52,872 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,872 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,874 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:52,874 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,875 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,875 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,875 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,875 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,876 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,879 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:52,882 UTC [3282171] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,883 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:52,883 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,883 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,884 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,884 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,884 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,882 UTC [3282170] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:52,884 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:52,885 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,885 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,885 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:52,886 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,888 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,889 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:52,889 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,890 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,888 UTC [3282170] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,891 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,892 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:52,892 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,891 UTC [3282170] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:52,893 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:52,893 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,893 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,894 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:52,895 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,895 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 21:33:52,895 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,896 UTC [3282173] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'area_statistics'] 2023-05-11 21:33:52,896 UTC [3282173] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:52,896 UTC [3282173] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:52,896 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,896 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:52,897 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:52,897 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:52,898 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:52,898 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:52,898 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,898 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,902 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,903 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 39 tasks waiting for ancestors, 9/56 done 2023-05-11 21:33:52,904 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,905 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,905 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:52,905 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,906 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:52,906 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:52,906 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,908 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,908 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,909 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,913 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:52,914 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:52,915 UTC [3282170] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:52,915 UTC [3282170] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:52,917 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,918 UTC [3282170] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,919 UTC [3282170] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 21:33:52,924 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,925 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:52,925 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,926 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:52,927 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,929 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,932 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,934 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:52,937 UTC [3282170] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:52,938 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,936 UTC [3282171] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:52,941 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 21:33:52,942 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:52,941 UTC [3282171] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,943 UTC [3282171] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:52,944 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,945 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:52,946 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,947 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:52,949 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,949 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:52,949 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,950 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:52,951 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,952 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:52,952 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,953 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:52,953 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,953 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,954 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,956 UTC [3282173] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,958 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:52,958 UTC [3282173] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:52,958 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:52,959 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:52,960 UTC [3282171] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:52,960 UTC [3282171] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:52,961 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:52,962 UTC [3282171] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,963 UTC [3282171] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 21:33:52,965 UTC [3282173] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:52,970 UTC [3282173] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,973 UTC [3282173] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:52,975 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:52,976 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:52,977 UTC [3282173] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 21:33:52,978 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:52,978 UTC [3282171] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:52,979 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:52,979 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:52,981 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 21:33:52,982 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:52,982 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:52,983 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:52,985 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:52,986 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:52,986 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:52,987 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:52,987 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:52,988 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:52,991 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:52,993 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:52,993 UTC [3282173] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_salinity / (1.0) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:52,993 UTC [3282173] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:52,996 UTC [3282173] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_salinity / (1.0) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:52,997 UTC [3282173] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 21:33:53,003 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:53,003 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:53,004 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,004 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,005 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,005 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,005 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:53,009 UTC [3282173] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:53,010 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:53,011 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 21:33:53,011 UTC [3282173] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:53,024 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:53,024 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:53,025 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,025 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,025 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,025 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,025 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:53,045 UTC [3282175] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 21:33:53,046 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:53,056 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:53,056 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,058 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:53,058 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,061 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,062 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:53,062 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,062 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:53,062 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,063 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:53,064 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:53,064 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,065 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:53,067 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,068 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,068 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,069 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:53,069 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,069 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:53,070 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,070 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,071 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:53,072 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:53,075 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,076 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:53,076 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,076 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,076 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,077 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,077 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:53,078 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,078 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,078 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,078 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,078 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:53,078 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,078 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,078 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,079 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,079 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,080 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,080 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,081 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,081 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:53,082 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:53,082 UTC [3282171] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 21:33:53,082 UTC [3282173] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:53,082 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,083 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:53,086 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,086 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,087 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,088 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,088 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:53,089 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,089 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,090 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,090 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,091 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:53,091 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,091 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,092 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:53,092 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 21:33:53,093 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:53,093 UTC [3282175] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:53,093 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 21:33:53,093 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:53,095 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:53,110 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:53,112 UTC [3282175] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/chl (priority 12) in 0:00:00.945708 2023-05-11 21:33:53,304 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 39 tasks waiting for ancestors, 10/56 done 2023-05-11 21:33:53,315 UTC [3282175] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries in process [3282175] 2023-05-11 21:33:53,318 UTC [3282175] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 21:33:53,318 UTC [3282175] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:53,318 UTC [3282175] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 21:33:53,318 UTC [3282175] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 21:33:53,319 UTC [3282175] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries 2023-05-11 21:33:53,319 UTC [3282175] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/log.txt 2023-05-11 21:33:53,319 UTC [3282175] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/settings.yml 2023-05-11 21:33:53,404 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 38 tasks waiting for ancestors, 10/56 done 2023-05-11 21:33:53,514 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:53,514 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,516 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:53,520 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,521 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:53,521 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,522 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:53,523 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:53,524 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:53,527 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,528 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:53,528 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,529 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:53,529 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,530 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,530 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,530 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,530 UTC [3282173] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,536 UTC [3282173] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:53,536 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,537 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,537 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,564 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:53,564 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,565 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,565 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,566 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:53,566 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,566 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:53,567 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:53,568 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:53,568 UTC [3282173] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 21:33:53,568 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:53,583 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:53,796 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 21:33:53,796 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:53,807 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:53,842 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:53,844 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 21:33:53,844 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:53,862 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:53,862 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:53,862 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:53,863 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:53,863 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:53,863 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:53,863 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,864 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:53,879 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:53,879 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:53,880 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:53,897 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:53,897 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:53,900 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:53,902 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:53,905 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:53,907 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:53,911 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:53,913 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:53,915 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:53,916 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:53,917 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:53,917 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:53,920 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:53,921 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:53,921 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:53,922 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:53,922 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:53,923 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:53,923 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:53,924 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:53,926 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:53,927 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:53,927 UTC [3282172] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:53,928 UTC [3282172] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:53,929 UTC [3282172] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:53,930 UTC [3282172] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 21:33:53,939 UTC [3282172] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:53,940 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:53,941 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 21:33:53,941 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:54,002 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/o2 (priority 18) in 0:00:01.195559 2023-05-11 21:33:54,003 UTC [3282171] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 21:33:54,003 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:54,016 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,054 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,056 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 21:33:54,056 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:54,080 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/no3 (priority 17) in 0:00:01.273718 2023-05-11 21:33:54,108 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 38 tasks waiting for ancestors, 11/56 done 2023-05-11 21:33:54,110 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/areacello in process [3282172] 2023-05-11 21:33:54,114 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:54,114 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,115 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,115 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,115 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,115 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,122 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,122 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,123 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,123 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,124 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:54,124 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,125 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,125 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,126 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,126 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,126 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,127 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:54,127 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:54,127 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,128 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 21:33:54,129 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:33:54,146 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/areacello (priority 20) in 0:00:00.035344 2023-05-11 21:33:54,168 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 21:33:54,168 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:54,180 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,208 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 37 tasks waiting for ancestors, 12/56 done 2023-05-11 21:33:54,210 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_timeseries_scalars/mfo in process [3282171] 2023-05-11 21:33:54,214 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,215 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:54,215 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,216 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/mfo_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,216 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,216 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,216 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 21:33:54,216 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 21:33:54,216 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:54,223 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc 2023-05-11 21:33:54,224 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,225 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,236 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/si (priority 19) in 0:00:01.429168 2023-05-11 21:33:54,263 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,265 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) 2023-05-11 21:33:54,265 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,266 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'mfo' 2023-05-11 21:33:54,271 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:54,273 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:54,283 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,284 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_scalar', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'mfo', timerange = '2001/2004', variable_group = 'mfo', diagnostic = 'diag_timeseries_scalars', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'mfo', standard_name = 'sea_water_transport_across_line', long_name = 'Sea Water Transport', units = 'kg s-1', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,285 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,286 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'mfo' 2023-05-11 21:33:54,286 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:54,287 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:54,288 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,289 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/mfo/mfo_Omon_HadGEM2-ES_historical_r1i1p1_185912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc') 2023-05-11 21:33:54,290 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc 2023-05-11 21:33:54,304 UTC [3282171] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/fileformats/netcdf/saver.py:2481: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison contains_value = fill_value is not None and fill_value in data 2023-05-11 21:33:54,309 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 36 tasks waiting for ancestors, 13/56 done 2023-05-11 21:33:54,312 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/thetao in process [3282172] 2023-05-11 21:33:54,317 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_scalars/mfo (priority 22) in 0:00:00.105913 2023-05-11 21:33:54,326 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:54,326 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:54,326 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:54,327 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,327 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:54,328 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:54,328 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,328 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,328 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:54,343 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:54,343 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,343 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:54,356 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:54,356 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,359 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:54,361 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,364 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:54,366 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:54,370 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:54,373 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:54,374 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,374 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:54,375 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:54,376 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:54,379 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,380 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:54,380 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,381 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:54,381 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:54,382 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:54,382 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:54,382 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,383 UTC [3282172] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:54,383 UTC [3282172] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:54,384 UTC [3282172] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:54,385 UTC [3282172] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 21:33:54,406 UTC [3282172] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:54,407 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:54,408 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,409 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 35 tasks waiting for ancestors, 14/56 done 2023-05-11 21:33:54,411 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/so in process [3282170] 2023-05-11 21:33:54,418 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,419 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 21:33:54,420 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:54,425 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:54,425 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:54,425 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:54,425 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,426 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,426 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,426 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,426 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:54,443 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:54,443 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,445 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,448 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,450 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:54,450 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,451 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:54,452 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:54,452 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:54,455 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,456 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,456 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,457 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:54,458 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,458 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,458 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,458 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,458 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,464 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,464 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,464 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,465 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,466 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:54,466 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,466 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,467 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,467 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,468 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,468 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,468 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:54,470 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:54,470 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 21:33:54,470 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:54,483 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,508 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:54,508 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:54,509 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,509 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,509 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,509 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,509 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:54,509 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 34 tasks waiting for ancestors, 15/56 done 2023-05-11 21:33:54,513 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_timeseries_scalars/Scalar_timeseries in process [3282171] 2023-05-11 21:33:54,514 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:54,515 UTC [3282171] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries/settings.yml'] 2023-05-11 21:33:54,515 UTC [3282171] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:54,515 UTC [3282171] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 21:33:54,515 UTC [3282171] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 21:33:54,515 UTC [3282171] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries 2023-05-11 21:33:54,515 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,515 UTC [3282171] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries/log.txt 2023-05-11 21:33:54,516 UTC [3282171] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries/settings.yml 2023-05-11 21:33:54,539 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,540 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 21:33:54,540 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:33:54,542 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:54,542 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,544 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,548 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,549 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:54,549 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,550 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:54,551 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:54,552 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:54,555 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,556 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:54,556 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,557 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:54,558 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:54,558 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,558 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:54,558 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:54,558 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,564 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:54,564 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:54,565 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,565 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:54,566 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:54,566 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:54,567 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,567 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:54,568 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:54,568 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:54,569 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:54,569 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:54,570 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:54,570 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 21:33:54,570 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:54,586 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,610 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 33 tasks waiting for ancestors, 15/56 done 2023-05-11 21:33:54,626 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:54,627 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:54,685 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:54,686 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 21:33:54,686 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:55,689 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:55,689 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:55,689 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:55,689 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:55,690 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:55,690 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:55,690 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:55,690 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,707 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,707 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:55,707 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,720 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,720 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:55,722 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:55,724 UTC [3282170] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,725 UTC [3282170] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:55,725 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:55,727 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:55,729 UTC [3282170] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:55,733 UTC [3282170] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:55,736 UTC [3282170] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:55,737 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:55,738 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:55,739 UTC [3282170] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 21:33:55,739 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:55,739 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:55,742 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:55,743 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:55,744 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:55,744 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/thetao (priority 24) in 0:00:01.432311 2023-05-11 21:33:55,745 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:55,745 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:55,746 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:55,746 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:55,746 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:55,747 UTC [3282170] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_salinity / (1.0) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:55,747 UTC [3282170] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:55,748 UTC [3282170] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_salinity / (1.0) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:55,749 UTC [3282170] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 21:33:55,769 UTC [3282170] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:55,770 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:55,771 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:55,780 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:55,781 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 21:33:55,781 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:55,911 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 33 tasks waiting for ancestors, 16/56 done 2023-05-11 21:33:55,914 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/no3 in process [3282172] 2023-05-11 21:33:55,916 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/so (priority 25) in 0:00:01.504763 2023-05-11 21:33:55,939 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:55,939 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:55,939 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:55,939 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:55,939 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:55,940 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:55,940 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:55,940 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:55,952 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:55,952 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:55,954 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:55,957 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:55,958 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:55,958 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:55,959 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:55,960 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:55,961 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:55,964 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:55,965 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:55,965 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:55,966 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:55,966 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:55,967 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:55,967 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:55,967 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:55,967 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:55,973 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:55,973 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:55,974 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:55,975 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:55,976 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:55,976 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:55,977 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:55,977 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:55,978 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:55,978 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:55,979 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:55,979 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:55,980 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:55,981 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of no3. 2023-05-11 21:33:55,981 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:55,996 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,012 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 32 tasks waiting for ancestors, 16/56 done 2023-05-11 21:33:56,031 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,032 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,054 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,056 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 21:33:56,057 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:33:56,112 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 32 tasks waiting for ancestors, 17/56 done 2023-05-11 21:33:56,115 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/o2 in process [3282170] 2023-05-11 21:33:56,131 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:56,131 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:56,132 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,132 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,132 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,133 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,133 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,133 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,133 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:56,149 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:56,149 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,150 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:56,166 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:33:56,166 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,169 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,171 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,173 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:56,175 UTC [3282170] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:56,180 UTC [3282170] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:56,182 UTC [3282170] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:56,183 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,184 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:56,185 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:56,186 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:56,188 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,189 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,190 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,190 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:56,191 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:56,191 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:56,191 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:56,192 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,193 UTC [3282170] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:56,193 UTC [3282170] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:56,194 UTC [3282170] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:56,195 UTC [3282170] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 21:33:56,213 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 31 tasks waiting for ancestors, 17/56 done 2023-05-11 21:33:56,216 UTC [3282170] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:56,217 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,218 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,227 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,229 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 21:33:56,229 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:33:56,260 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:56,260 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,260 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,261 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,261 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,262 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,262 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,262 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:56,278 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:56,279 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,279 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:56,295 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:33:56,295 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,299 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,302 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,305 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:56,308 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:56,313 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:56,316 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:56,317 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,318 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:56,320 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:56,321 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:56,324 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,325 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,326 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,326 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:33:56,327 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:56,328 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:56,328 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:56,328 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,329 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:56,329 UTC [3282172] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:56,329 UTC [3282172] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:56,329 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,329 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,330 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,330 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,330 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,330 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,330 UTC [3282172] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:56,332 UTC [3282172] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 21:33:56,347 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,347 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,350 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,353 UTC [3282172] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:56,353 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,354 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,354 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,356 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:56,356 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,358 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:56,360 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:56,361 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:56,364 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,366 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,366 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 21:33:56,366 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:33:56,368 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,368 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,369 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:33:56,370 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,371 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,371 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,371 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,371 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,381 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,381 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,382 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,384 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,385 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:56,385 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,386 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,386 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,388 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,388 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,389 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,389 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:56,392 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:56,392 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of o2. 2023-05-11 21:33:56,392 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:56,414 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,451 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,452 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,454 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/no3 (priority 26) in 0:00:00.539936 2023-05-11 21:33:56,470 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,472 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 21:33:56,472 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:33:56,613 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 31 tasks waiting for ancestors, 18/56 done 2023-05-11 21:33:56,616 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/si in process [3282172] 2023-05-11 21:33:56,635 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:56,635 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:56,635 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,636 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,636 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,636 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,636 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,636 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,664 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,664 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,666 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,668 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,669 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/o2 (priority 27) in 0:00:00.553745 2023-05-11 21:33:56,670 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:56,670 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,671 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:56,671 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:56,672 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:56,675 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,676 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,676 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,677 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:56,677 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,678 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,678 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,678 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,678 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,683 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,683 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,684 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,685 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,685 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:56,685 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,686 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,686 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,687 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,687 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,688 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,688 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:56,689 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:56,689 UTC [3282172] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of si. 2023-05-11 21:33:56,689 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:56,703 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,714 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 30 tasks waiting for ancestors, 18/56 done 2023-05-11 21:33:56,738 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,739 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,756 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,758 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 21:33:56,758 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:33:56,814 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 30 tasks waiting for ancestors, 19/56 done 2023-05-11 21:33:56,816 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/chl in process [3282170] 2023-05-11 21:33:56,821 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:56,821 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,822 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,880 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:56,880 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,882 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,884 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,886 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:56,886 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,887 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:56,887 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:56,888 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:56,891 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,892 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:56,892 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,893 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:33:56,893 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,894 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,894 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,894 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,894 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,899 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:56,899 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:56,900 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,901 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:56,901 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:56,901 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:56,902 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,902 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:56,903 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:56,903 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:56,904 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:56,904 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:56,905 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:56,905 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of chl. 2023-05-11 21:33:56,906 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:56,915 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 29 tasks waiting for ancestors, 19/56 done 2023-05-11 21:33:56,921 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,964 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:56,965 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:56,972 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:56,973 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:56,973 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:56,973 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,974 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:56,974 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:56,974 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,974 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:56,984 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:56,986 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 21:33:56,986 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:33:56,990 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:56,990 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:56,990 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:57,005 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:33:57,005 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,008 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:57,010 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,012 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:57,014 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:57,019 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:57,021 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:57,022 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,023 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:57,024 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:57,025 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:57,028 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,029 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_profile_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:33:57,029 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,030 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:33:57,031 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:57,031 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:57,031 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:57,032 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,033 UTC [3282172] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:33:57,033 UTC [3282172] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:33:57,034 UTC [3282172] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:57,035 UTC [3282172] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 102, 180, 360) 2023-05-11 21:33:57,055 UTC [3282172] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:33:57,056 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:57,056 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,066 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:57,067 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 21:33:57,067 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:33:57,188 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/si (priority 28) in 0:00:00.571612 2023-05-11 21:33:57,232 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/chl (priority 30) in 0:00:00.415761 2023-05-11 21:33:57,299 UTC [3282174] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:33:57,300 UTC [3282174] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:33:57,300 UTC [3282174] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 21:33:57,300 UTC [3282174] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diagnostic_provenance.yml 2023-05-11 21:33:57,315 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 29 tasks waiting for ancestors, 20/56 done 2023-05-11 21:33:57,324 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,324 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,324 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,324 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30814 2023-05-11 21:33:57,337 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_profile_vs_WOA/Global_profile_vs_WOA in process [3282172] 2023-05-11 21:33:57,341 UTC [3282172] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA/settings.yml'] 2023-05-11 21:33:57,341 UTC [3282172] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:57,341 UTC [3282172] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 21:33:57,341 UTC [3282172] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 21:33:57,341 UTC [3282172] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_vs_WOA/Global_profile_vs_WOA 2023-05-11 21:33:57,341 UTC [3282172] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA/log.txt 2023-05-11 21:33:57,341 UTC [3282172] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA/settings.yml 2023-05-11 21:33:57,390 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,390 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,390 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,390 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30851 2023-05-11 21:33:57,416 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 28 tasks waiting for ancestors, 21/56 done 2023-05-11 21:33:57,419 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/dfe in process [3282170] 2023-05-11 21:33:57,428 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:57,428 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:57,428 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:57,428 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:57,429 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,429 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:57,429 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,429 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:57,494 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,494 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,494 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,494 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27637 2023-05-11 21:33:57,564 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 27 tasks waiting for ancestors, 21/56 done 2023-05-11 21:33:57,569 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:57,570 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,571 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,574 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,575 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:57,575 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,576 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:33:57,577 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:57,578 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:57,581 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,582 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,582 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,583 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:33:57,583 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:57,583 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,583 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:57,584 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,584 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:57,589 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:57,589 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,590 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,590 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,591 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:57,591 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,592 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:57,592 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,593 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,593 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,593 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:57,594 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:57,595 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:57,595 UTC [3282170] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of dfe. 2023-05-11 21:33:57,595 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:57,608 UTC [3282174] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 21:33:57,610 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,613 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,613 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,614 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,614 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30175 2023-05-11 21:33:57,638 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:57,639 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/volcello/volcello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 21:33:57,640 UTC [3282169] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:57,645 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:57,646 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,648 UTC [3282174] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 21:33:57,652 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,652 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,652 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,652 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 31115 2023-05-11 21:33:57,664 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:57,666 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 21:33:57,666 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:33:57,687 UTC [3282174] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_timeseries_global_volume_average_diag_timeseries_volume_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries is a string but should be a list of strings 2023-05-11 21:33:57,692 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:57,692 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:57,692 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:57,692 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27740 2023-05-11 21:33:57,705 UTC [3282169] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:57,706 UTC [3282169] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:57,706 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:57,706 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:57,707 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:57,707 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:57,707 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,707 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:57,726 UTC [3282174] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries took 0.4 seconds 2023-05-11 21:33:57,726 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_no_obs/Global_Volume_verage_timeseries (priority 5) in 0:00:05.449560 2023-05-11 21:33:57,727 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:57,727 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,727 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:57,744 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:33:57,744 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,746 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:57,749 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,751 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:57,754 UTC [3282169] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:57,759 UTC [3282169] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:57,761 UTC [3282169] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:57,762 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,763 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:57,764 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:57,765 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:57,768 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,769 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_timeseries_global_volume_average', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_volume_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:57,770 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,771 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:57,771 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:57,772 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:57,772 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step volume_statistics 2023-05-11 21:33:57,773 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'volume_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,773 UTC [3282169] DEBUG esmvalcore.preprocessor._volume:166 Cell measure "ocean_volume" not found in cube. Check fx_file availability. 2023-05-11 21:33:57,773 UTC [3282169] DEBUG esmvalcore.preprocessor._volume:168 Attempting to calculate grid cell volume... 2023-05-11 21:33:57,773 UTC [3282169] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/analysis/cartography.py:412: UserWarning: Using DEFAULT_SPHERICAL_EARTH_RADIUS. warnings.warn("Using DEFAULT_SPHERICAL_EARTH_RADIUS.") 2023-05-11 21:33:57,864 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 27 tasks waiting for ancestors, 22/56 done 2023-05-11 21:33:57,867 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/talk in process [3282174] 2023-05-11 21:33:57,873 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['area_statistics', 'annual_statistics'] 2023-05-11 21:33:57,873 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:57,873 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:57,873 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:57,874 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/talk_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,874 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:57,874 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,874 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:57,889 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:33:57,889 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,891 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,893 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,895 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:33:57,895 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,896 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:57,897 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:57,898 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:57,900 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,901 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_profile', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'talk', timerange = '2001/2004', variable_group = 'talk', diagnostic = 'diag_profile_no_obs', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'talk', standard_name = 'sea_water_alkalinity_expressed_as_mole_equivalent', long_name = 'Total Alkalinity', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:33:57,902 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,903 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'talk' 2023-05-11 21:33:57,903 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:57,903 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,903 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:57,903 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:57,904 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:57,905 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/dfe (priority 31) in 0:00:00.485889 2023-05-11 21:33:57,909 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:33:57,909 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:57,910 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,911 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:57,911 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:33:57,911 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:57,912 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:57,912 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:57,913 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', institute = 'MOHC', product = ['output1', 'output2'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:33:57,913 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:57,914 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:33:57,914 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:57,915 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:57,916 UTC [3282174] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of talk. 2023-05-11 21:33:57,916 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:33:57,929 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,961 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step annual_statistics 2023-05-11 21:33:57,961 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'annual_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:57,965 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 26 tasks waiting for ancestors, 22/56 done 2023-05-11 21:33:57,980 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:57,981 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/talk/talk_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc') 2023-05-11 21:33:57,982 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:33:58,052 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:58,053 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 21:33:58,054 UTC [3282169] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:33:58,065 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 26 tasks waiting for ancestors, 23/56 done 2023-05-11 21:33:58,067 UTC [3282170] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/thetao in process [3282170] 2023-05-11 21:33:58,073 UTC [3282169] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/thetao (priority 1) in 0:00:07.508794 2023-05-11 21:33:58,078 UTC [3282170] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 21:33:58,078 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:33:58,078 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:58,078 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:58,079 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:58,079 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:58,079 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:58,079 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:58,165 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 25 tasks waiting for ancestors, 23/56 done 2023-05-11 21:33:58,184 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/talk (priority 32) in 0:00:00.316396 2023-05-11 21:33:58,266 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 25 tasks waiting for ancestors, 24/56 done 2023-05-11 21:33:58,278 UTC [3282169] INFO esmvalcore._task:259 Starting task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries in process [3282169] 2023-05-11 21:33:58,281 UTC [3282169] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 21:33:58,281 UTC [3282169] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:58,281 UTC [3282169] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:33:58,281 UTC [3282169] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:33:58,281 UTC [3282169] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:33:58,281 UTC [3282169] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/log.txt 2023-05-11 21:33:58,281 UTC [3282169] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml 2023-05-11 21:33:58,333 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:33:58,333 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:58,335 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:58,338 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:58,340 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:33:58,340 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:58,341 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:58,342 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:58,343 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:33:58,346 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:58,347 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:33:58,347 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:58,348 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:33:58,348 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:58,349 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:58,349 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:58,350 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:58,366 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 24 tasks waiting for ancestors, 25/56 done 2023-05-11 21:33:58,376 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_profile_no_obs/Global_profile_no_obs in process [3282174] 2023-05-11 21:33:58,379 UTC [3282174] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs/settings.yml'] 2023-05-11 21:33:58,379 UTC [3282174] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:33:58,379 UTC [3282174] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:33:58,379 UTC [3282174] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:33:58,379 UTC [3282174] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:33:58,379 UTC [3282174] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs/log.txt 2023-05-11 21:33:58,379 UTC [3282174] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_profiles.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs/settings.yml 2023-05-11 21:33:58,467 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 23 tasks waiting for ancestors, 25/56 done 2023-05-11 21:33:59,338 UTC [3282175] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:33:59,339 UTC [3282175] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:33:59,339 UTC [3282175] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 21:33:59,340 UTC [3282175] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 21:33:59,366 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,366 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,366 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,366 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28855 2023-05-11 21:33:59,433 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,433 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,434 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,434 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42006 2023-05-11 21:33:59,500 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,500 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,500 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,500 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28416 2023-05-11 21:33:59,556 UTC [3282175] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_prep_global_Surface_average_timeseries_2D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:33:59,561 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,561 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,561 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,561 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41656 2023-05-11 21:33:59,596 UTC [3282175] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:33:59,600 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,600 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,600 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,600 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27455 2023-05-11 21:33:59,635 UTC [3282175] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_no_obs_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:33:59,640 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:33:59,640 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:33:59,640 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:33:59,640 UTC [3282175] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28636 2023-05-11 21:33:59,674 UTC [3282175] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries took 0.3 seconds 2023-05-11 21:33:59,674 UTC [3282175] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_no_obs/Global_Volume_Average_timeseries (priority 9) in 0:00:06.358865 2023-05-11 21:33:59,869 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 23 tasks waiting for ancestors, 26/56 done 2023-05-11 21:33:59,871 UTC [3282175] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/so in process [3282175] 2023-05-11 21:33:59,887 UTC [3282175] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 21:33:59,888 UTC [3282175] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:59,888 UTC [3282175] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:33:59,888 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:33:59,888 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:59,889 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:59,889 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:33:59,889 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:59,889 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,904 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,904 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:33:59,904 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,917 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,917 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:33:59,920 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:59,921 UTC [3282175] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,922 UTC [3282175] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:33:59,922 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:33:59,925 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 21:33:59,928 UTC [3282175] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:33:59,932 UTC [3282175] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:33:59,935 UTC [3282175] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:33:59,936 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:33:59,937 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:59,938 UTC [3282175] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 21:33:59,938 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:33:59,939 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:33:59,941 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:33:59,942 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:33:59,943 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:33:59,944 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:33:59,944 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:33:59,945 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:33:59,945 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:33:59,946 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:33:59,948 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:33:59,949 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:33:59,953 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:33:59,954 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:33:59,956 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:33:59,957 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 21:33:59,958 UTC [3282175] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:33:59,970 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 22 tasks waiting for ancestors, 26/56 done 2023-05-11 21:34:00,032 UTC [3282175] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:34:00,032 UTC [3282175] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:00,032 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:00,032 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:00,032 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:00,033 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:00,033 UTC [3282175] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:00,054 UTC [3282175] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:00,054 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:00,055 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:00,059 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:00,060 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:34:00,060 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:00,061 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:00,062 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:00,063 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:00,066 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:00,067 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:00,067 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:00,068 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:00,068 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:00,069 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:00,069 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:00,070 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:03,359 UTC [3282172] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:03,359 UTC [3282172] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:03,359 UTC [3282172] DEBUG esmvalcore._task:589 Script ocean/diagnostic_profiles.py completed successfully 2023-05-11 21:34:03,360 UTC [3282172] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_vs_WOA/Global_profile_vs_WOA/diagnostic_provenance.yml 2023-05-11 21:34:03,386 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,386 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,386 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,386 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37414 2023-05-11 21:34:03,396 UTC [3282174] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:03,397 UTC [3282174] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:03,397 UTC [3282174] DEBUG esmvalcore._task:589 Script ocean/diagnostic_profiles.py completed successfully 2023-05-11 21:34:03,397 UTC [3282174] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_profile_no_obs/Global_profile_no_obs/diagnostic_provenance.yml 2023-05-11 21:34:03,404 UTC [3282174] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:34:03,412 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,412 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,412 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,412 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37262 2023-05-11 21:34:03,434 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,434 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,434 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,435 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41236 2023-05-11 21:34:03,448 UTC [3282174] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:34:03,455 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,455 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,455 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,455 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 35309 2023-05-11 21:34:03,482 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,482 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,482 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,482 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41587 2023-05-11 21:34:03,490 UTC [3282174] WARNING esmvalcore._task:662 Invalid ancestor file specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_profile_no_obs/Global_profile_no_obs/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_prep_global_profile_diag_profile_no_obs_2001_2004_profile.png, created by diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs 2023-05-11 21:34:03,498 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,498 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,498 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,498 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37319 2023-05-11 21:34:03,530 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,530 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,530 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,530 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 50077 2023-05-11 21:34:03,533 UTC [3282174] WARNING esmvalcore._task:679 Valid ancestor files for diagnostic script ocean/diagnostic_profiles.py in task diag_profile_no_obs/Global_profile_no_obs are: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_profile_no_obs/talk/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_talk_2001-2004.nc 2023-05-11 21:34:03,534 UTC [3282174] DEBUG esmvalcore._task:683 Collecting provenance of task diag_profile_no_obs/Global_profile_no_obs took 0.1 seconds 2023-05-11 21:34:03,534 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_profile_no_obs/Global_profile_no_obs (priority 29) in 0:00:05.157698 2023-05-11 21:34:03,578 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:03,578 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:03,579 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:03,579 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 43262 2023-05-11 21:34:03,615 UTC [3282172] DEBUG esmvalcore._task:683 Collecting provenance of task diag_profile_vs_WOA/Global_profile_vs_WOA took 0.3 seconds 2023-05-11 21:34:03,615 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_profile_vs_WOA/Global_profile_vs_WOA (priority 23) in 0:00:06.277763 2023-05-11 21:34:03,675 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 22 tasks waiting for ancestors, 27/56 done 2023-05-11 21:34:03,678 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/no3 in process [3282174] 2023-05-11 21:34:03,693 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 21:34:03,693 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:34:03,693 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:03,694 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:03,694 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,694 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,695 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:03,695 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,695 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:03,709 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:03,709 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,710 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:03,722 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:03,723 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:03,725 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,727 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:03,730 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:03,733 UTC [3282174] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:03,737 UTC [3282174] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:03,740 UTC [3282174] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:03,741 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:03,742 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:03,743 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:03,744 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:03,746 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:03,747 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,747 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:03,748 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:03,748 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:03,749 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:03,749 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:03,750 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:03,752 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:03,753 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:03,757 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:03,758 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:03,760 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:03,762 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 21:34:03,763 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:34:03,776 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 21 tasks waiting for ancestors, 28/56 done 2023-05-11 21:34:03,777 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/si in process [3282172] 2023-05-11 21:34:03,792 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 21:34:03,792 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:34:03,792 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:03,792 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:03,793 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,793 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,793 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:03,793 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,793 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:03,802 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:34:03,802 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:03,803 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:03,803 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,803 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:03,803 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,803 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:03,808 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:03,809 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,809 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:03,820 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:03,820 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:03,821 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:03,821 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:03,821 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,824 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,824 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:03,826 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:03,826 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:03,826 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:03,826 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:03,827 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:03,828 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:03,828 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:03,831 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:03,832 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,832 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:03,830 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:03,833 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:03,833 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:03,834 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:03,834 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:03,835 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:03,834 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:03,837 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:03,838 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:03,839 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:03,840 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:03,840 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:03,843 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:03,844 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:03,844 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:03,845 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:03,845 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:03,846 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:03,846 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:03,847 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:03,849 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:03,850 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:03,853 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:03,855 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:03,856 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:03,859 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 21:34:03,859 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:34:03,876 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 20 tasks waiting for ancestors, 28/56 done 2023-05-11 21:34:03,900 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:34:03,900 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:03,900 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:03,900 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,900 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:03,901 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:03,901 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:03,917 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:03,917 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:03,919 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,922 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:03,923 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:03,923 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:03,924 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:03,925 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:03,926 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:03,928 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:03,929 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:03,930 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:03,930 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:03,931 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:03,932 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:03,932 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:03,932 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:04,559 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:04,561 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:04,574 UTC [3282174] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:04,574 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:04,575 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:04,586 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:04,588 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 21:34:04,588 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:34:04,610 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/no3 (priority 37) in 0:00:00.932250 2023-05-11 21:34:04,644 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:04,645 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:04,657 UTC [3282172] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:04,657 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:04,659 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:04,669 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:04,671 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 21:34:04,671 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:34:04,692 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/si (priority 38) in 0:00:00.914150 2023-05-11 21:34:04,778 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 20 tasks waiting for ancestors, 29/56 done 2023-05-11 21:34:04,780 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/o2 in process [3282174] 2023-05-11 21:34:04,793 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics', 'regrid'] 2023-05-11 21:34:04,793 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:04,794 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:04,823 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:04,823 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:04,825 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:04,827 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:04,829 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:04,829 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:04,830 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:04,831 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:04,831 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:04,834 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:04,835 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:04,835 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:04,836 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:04,837 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:04,837 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:04,837 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:04,838 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:04,878 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 19 tasks waiting for ancestors, 30/56 done 2023-05-11 21:34:04,881 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/areacello in process [3282172] 2023-05-11 21:34:04,885 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:04,885 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:04,886 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:04,886 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:04,886 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:04,886 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:34:04,893 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:34:04,893 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:04,894 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:04,895 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:04,895 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:34:04,895 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:04,896 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:34:04,896 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:04,897 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:04,897 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:04,898 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:34:04,898 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:04,899 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:04,899 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:04,900 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 21:34:04,900 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:34:04,917 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/areacello (priority 40) in 0:00:00.036290 2023-05-11 21:34:04,958 UTC [3282176] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of thetao. 2023-05-11 21:34:04,959 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:34:04,972 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:04,979 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 18 tasks waiting for ancestors, 30/56 done 2023-05-11 21:34:05,066 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,067 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 21:34:05,067 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:34:05,079 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 18 tasks waiting for ancestors, 31/56 done 2023-05-11 21:34:05,082 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/intpp in process [3282172] 2023-05-11 21:34:05,085 UTC [3282176] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:05,085 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,085 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,086 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:05,086 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:05,086 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,087 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,087 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:05,090 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics'] 2023-05-11 21:34:05,090 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:34:05,090 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,091 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,091 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/intpp_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,092 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,092 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,092 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:34:05,107 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:05,107 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,107 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:05,110 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:34:05,110 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,112 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,119 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:05,119 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,122 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:05,124 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,125 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,126 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:05,127 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 21:34:05,127 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,128 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 21:34:05,130 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,130 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:05,130 UTC [3282176] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:05,135 UTC [3282176] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:05,137 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,138 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'intpp', timerange = '2001/2004', variable_group = 'intpp', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'intpp', standard_name = 'net_primary_mole_productivity_of_carbon_by_phytoplankton', long_name = 'Primary Organic Carbon Production by All Types of Phytoplankton', units = 'mol m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,138 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,137 UTC [3282176] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:05,139 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,139 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'intpp' 2023-05-11 21:34:05,139 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,139 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:05,140 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,140 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:05,140 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,141 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:05,141 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:05,144 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,145 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,145 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_global_Surface_average_timeseries_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_timeseries_surface_average_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:05,145 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,146 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:05,146 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,147 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/intpp/intpp_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc') 2023-05-11 21:34:05,147 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,147 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:05,148 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:05,147 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/intpp/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_intpp_2001-2004.nc 2023-05-11 21:34:05,150 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:34:05,151 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:05,151 UTC [3282176] DEBUG esmvalcore.preprocessor._area:269 Cell measure "cell_area" not found in cube sea_water_potential_temperature / (K) (time: 1; latitude: 180; longitude: 360). Check fx_file availability. 2023-05-11 21:34:05,151 UTC [3282176] DEBUG esmvalcore.preprocessor._area:272 Attempting to calculate grid cell area... 2023-05-11 21:34:05,153 UTC [3282176] DEBUG esmvalcore.preprocessor._area:200 Using DEFAULT_SPHERICAL_EARTH_RADIUS. while computing area weights of the following cube: sea_water_potential_temperature / (K) (time: 1; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Scalar coordinates: depth 0.0 meters, bound=(-2.5, 2.5) meters Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:05,154 UTC [3282176] DEBUG esmvalcore.preprocessor._area:298 Calculated grid area shape: (1, 180, 360) 2023-05-11 21:34:05,164 UTC [3282176] DEBUG esmvalcore.preprocessor._area:317 area_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:05,165 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,165 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 21:34:05,166 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:05,179 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 17 tasks waiting for ancestors, 31/56 done 2023-05-11 21:34:05,211 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/thetao (priority 15) in 0:00:12.506461 2023-05-11 21:34:05,267 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/intpp (priority 42) in 0:00:00.185164 2023-05-11 21:34:05,304 UTC [3282169] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.5 GB 2023-05-11 21:34:05,305 UTC [3282169] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:05,305 UTC [3282169] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 21:34:05,305 UTC [3282169] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 21:34:05,346 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,346 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,346 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,346 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 22113 2023-05-11 21:34:05,380 UTC [3282027] INFO esmvalcore._task:778 Progress: 6 tasks running, 17 tasks waiting for ancestors, 33/56 done 2023-05-11 21:34:05,383 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/fgco2 in process [3282176] 2023-05-11 21:34:05,383 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/chl in process [3282172] 2023-05-11 21:34:05,387 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics'] 2023-05-11 21:34:05,387 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:34:05,387 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,387 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,388 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,388 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,388 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,388 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:05,407 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,407 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,407 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,407 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 23110 2023-05-11 21:34:05,409 UTC [3282176] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics'] 2023-05-11 21:34:05,409 UTC [3282176] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/fgco2_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,410 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:34:05,416 UTC [3282176] WARNING py.warnings:109 /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/iris/fileformats/_nc_load_rules/helpers.py:229: UnknownCellMethodWarning: NetCDF variable 'fgco2' contains unknown cell method 'where' warnings.warn(message=msg, category=UnknownCellMethodWarning) 2023-05-11 21:34:05,422 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:05,422 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,424 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,425 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:34:05,425 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,426 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,426 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,428 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:05,428 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,429 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:34:05,430 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,431 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:05,434 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,434 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,435 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,436 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:34:05,436 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,437 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,437 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:05,438 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:05,439 UTC [3282176] WARNING esmvalcore.cmor.check:261 There were warnings in variable fgco2: fgco2: attribute positive not present loaded from file /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc 2023-05-11 21:34:05,439 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,440 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) 2023-05-11 21:34:05,440 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,441 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'fgco2' 2023-05-11 21:34:05,443 UTC [3282176] WARNING esmvalcore.cmor.check:261 There were warnings in variable fgco2: fgco2: attribute positive not present loaded from file 2023-05-11 21:34:05,443 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,444 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:05,448 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,449 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_2D', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'fgco2', timerange = '2001/2004', variable_group = 'fgco2', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'fgco2', standard_name = 'surface_downward_mass_flux_of_carbon_dioxide_expressed_as_carbon', long_name = 'Surface Downward CO2 Flux', units = 'kg m-2 s-1', modeling_realm = ['ocnBgchem'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:05,450 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,450 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'fgco2' 2023-05-11 21:34:05,451 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,451 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,451 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:05,452 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:05,456 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,458 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocnBgchem/Omon/r1i1p1/v20110916/fgco2/fgco2_Omon_HadGEM2-ES_historical_r1i1p1_195912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc') 2023-05-11 21:34:05,458 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/fgco2/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_fgco2_2001-2004.nc 2023-05-11 21:34:05,469 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,469 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,469 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,469 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18944 2023-05-11 21:34:05,481 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 15 tasks waiting for ancestors, 33/56 done 2023-05-11 21:34:05,530 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,531 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,531 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,531 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 22936 2023-05-11 21:34:05,541 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:05,542 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:05,557 UTC [3282174] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:05,557 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:05,559 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:05,572 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,575 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 21:34:05,575 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:34:05,579 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,581 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/fgco2 (priority 43) in 0:00:00.198292 2023-05-11 21:34:05,584 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,584 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,584 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,584 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42158 2023-05-11 21:34:05,589 UTC [3282171] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:05,590 UTC [3282171] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:05,590 UTC [3282171] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 21:34:05,591 UTC [3282171] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_scalars/Scalar_timeseries/diagnostic_provenance.yml 2023-05-11 21:34:05,594 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:34:05,594 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,595 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,595 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:05,595 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:05,595 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,596 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,596 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:05,610 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:05,610 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,610 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:05,621 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,622 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:05,623 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,625 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:05,626 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,626 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,626 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,626 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32048 2023-05-11 21:34:05,627 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,630 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:05,632 UTC [3282174] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:05,636 UTC [3282174] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:05,639 UTC [3282174] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:05,640 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,641 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:05,642 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,642 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:05,645 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,646 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:05,646 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,647 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:05,647 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,648 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,648 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:05,649 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:05,651 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:05,652 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:05,656 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:05,657 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:05,659 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,661 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 21:34:05,661 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,661 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,661 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,661 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,661 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27400 2023-05-11 21:34:05,661 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:34:05,666 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,666 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,666 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,666 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30622 2023-05-11 21:34:05,700 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,705 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,706 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,706 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,706 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32343 2023-05-11 21:34:05,710 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/o2 (priority 39) in 0:00:00.930715 2023-05-11 21:34:05,725 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,725 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,725 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,725 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27757 2023-05-11 21:34:05,741 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_thetao_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,745 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,745 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,745 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,745 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18713 2023-05-11 21:34:05,775 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_no3_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,779 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,779 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,779 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,779 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 17862 2023-05-11 21:34:05,782 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 15 tasks waiting for ancestors, 34/56 done 2023-05-11 21:34:05,784 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/dfe in process [3282176] 2023-05-11 21:34:05,786 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,786 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,786 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,786 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28810 2023-05-11 21:34:05,787 UTC [3282176] DEBUG esmvalcore.preprocessor:660 Running block ['extract_levels', 'climate_statistics'] 2023-05-11 21:34:05,787 UTC [3282176] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:34:05,788 UTC [3282176] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,788 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,788 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,788 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,789 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,789 UTC [3282176] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:05,802 UTC [3282176] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:05,802 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,804 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,807 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,809 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_o2_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,809 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:05,809 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,810 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:34:05,811 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:05,811 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:05,812 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,812 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,812 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,812 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19912 2023-05-11 21:34:05,814 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,815 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_3D', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:05,816 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,816 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:34:05,817 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,818 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,818 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:05,818 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:05,842 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_volume_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_si_prep_timeseries_global_volume_average_diag_timeseries_volume_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:05,846 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:05,846 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:05,846 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:05,846 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15924 2023-05-11 21:34:05,876 UTC [3282169] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries took 0.6 seconds 2023-05-11 21:34:05,876 UTC [3282169] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_volume_average_vs_WOA/Global_Volume_Average_timeseries (priority 0) in 0:00:07.597512 2023-05-11 21:34:05,887 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 14 tasks waiting for ancestors, 35/56 done 2023-05-11 21:34:05,892 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/areacello in process [3282174] 2023-05-11 21:34:05,895 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:05,895 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:05,896 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/areacello_fx_CMIP5_HadGEM2-ES_historical_r0i0p0_v20130612_'), add_unique_suffix = True, mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:05,896 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:05,896 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:05,896 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:34:05,902 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc 2023-05-11 21:34:05,902 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:05,903 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:05,904 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:05,904 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) 2023-05-11 21:34:05,904 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:05,905 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:34:05,905 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:05,906 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , mip = 'fx', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r0i0p0', short_name = 'areacello', variable_group = 'areacello', diagnostic = 'diag_surface_maps_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'areacello', standard_name = 'cell_area', long_name = 'Ocean Grid-Cell Area', units = 'm2', modeling_realm = ['ocean'], frequency = 'fx', version = 'v20130612' 2023-05-11 21:34:05,906 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:05,907 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'fx', frequency = 'fx', short_name = 'areacello' 2023-05-11 21:34:05,907 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:05,908 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:05,908 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:05,908 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc') 2023-05-11 21:34:05,991 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 13 tasks waiting for ancestors, 36/56 done 2023-05-11 21:34:05,993 UTC [3282169] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/thetao in process [3282169] 2023-05-11 21:34:06,007 UTC [3282169] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:06,007 UTC [3282169] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:06,008 UTC [3282169] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,008 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,008 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,009 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,009 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,009 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,009 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:06,026 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:06,026 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,026 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:06,040 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:06,041 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:06,043 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,045 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:06,048 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:06,050 UTC [3282169] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:06,054 UTC [3282169] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:06,056 UTC [3282169] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:06,058 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:06,058 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:06,059 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:06,060 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:06,063 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:06,063 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,064 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:06,064 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:06,065 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:06,065 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:06,066 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,066 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,071 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:06,072 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:06,081 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:06,082 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:06,086 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:06,087 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:06,089 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,091 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 12 tasks waiting for ancestors, 36/56 done 2023-05-11 21:34:06,092 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 21:34:06,092 UTC [3282169] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:06,154 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/areacello/CMIP5_HadGEM2-ES_fx_historical_r0i0p0_areacello.nc 2023-05-11 21:34:06,156 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,156 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,156 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,156 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27443 2023-05-11 21:34:06,174 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/areacello (priority 46) in 0:00:00.282107 2023-05-11 21:34:06,179 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,181 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,193 UTC [3282172] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:06,194 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,196 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 21:34:06,197 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:34:06,215 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/chl (priority 44) in 0:00:00.831583 2023-05-11 21:34:06,218 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,218 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,218 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,218 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27934 2023-05-11 21:34:06,278 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,278 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,278 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,278 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27809 2023-05-11 21:34:06,291 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 12 tasks waiting for ancestors, 37/56 done 2023-05-11 21:34:06,294 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/so in process [3282174] 2023-05-11 21:34:06,309 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:06,309 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:34:06,309 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,310 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,310 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,310 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,310 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,311 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,311 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,325 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,325 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,325 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,339 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,339 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,339 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,339 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28247 2023-05-11 21:34:06,339 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,339 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:06,342 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,343 UTC [3282174] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,344 UTC [3282174] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc 2023-05-11 21:34:06,344 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:06,347 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:06,349 UTC [3282174] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:06,353 UTC [3282174] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:06,355 UTC [3282174] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_salinity / (0.001) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:06,357 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:06,357 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:06,358 UTC [3282174] WARNING esmvalcore.cmor.check:261 There were warnings in variable so: Variable so units 0.001 will be converted to psu loaded from file 2023-05-11 21:34:06,358 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:06,359 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:06,362 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:06,363 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'so', timerange = '2000/2000', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:06,364 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:06,365 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:06,365 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:06,366 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:06,366 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,367 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,371 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:06,373 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:06,379 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:06,381 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:06,384 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:06,386 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:06,388 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,389 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_so_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc') 2023-05-11 21:34:06,389 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc 2023-05-11 21:34:06,392 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 11 tasks waiting for ancestors, 38/56 done 2023-05-11 21:34:06,394 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/no3 in process [3282172] 2023-05-11 21:34:06,399 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,399 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,399 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,399 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28059 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:06,411 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,412 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,412 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:06,424 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:06,424 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:06,426 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:06,428 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:06,430 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:06,430 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:06,431 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:06,432 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:06,432 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:06,435 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:06,436 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'no3', timerange = '2001/2004', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:06,436 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:06,437 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:06,438 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:06,438 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:06,438 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,439 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,443 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:06,445 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:06,451 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:06,452 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:06,456 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:06,457 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:06,459 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,459 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,459 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,459 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27391 2023-05-11 21:34:06,459 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,461 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/no3/no3_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc') 2023-05-11 21:34:06,461 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc 2023-05-11 21:34:06,492 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 10 tasks waiting for ancestors, 38/56 done 2023-05-11 21:34:06,519 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,519 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,520 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,520 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 26827 2023-05-11 21:34:06,537 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,538 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,551 UTC [3282176] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:06,551 UTC [3282176] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,553 UTC [3282176] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 21:34:06,553 UTC [3282176] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:34:06,572 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/dfe (priority 45) in 0:00:00.788324 2023-05-11 21:34:06,579 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,579 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,579 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,579 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29394 2023-05-11 21:34:06,639 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,639 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,639 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,639 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29592 2023-05-11 21:34:06,660 UTC [3282169] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:34:06,661 UTC [3282169] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,661 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,661 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:06,662 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,662 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,662 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:06,693 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 10 tasks waiting for ancestors, 39/56 done 2023-05-11 21:34:06,699 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,700 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,700 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,700 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28907 2023-05-11 21:34:06,706 UTC [3282176] INFO esmvalcore._task:259 Starting task diag_surface_maps_no_data/Global_Ocean_surface_map in process [3282176] 2023-05-11 21:34:06,709 UTC [3282176] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map/settings.yml'] 2023-05-11 21:34:06,709 UTC [3282176] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:06,709 UTC [3282176] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 21:34:06,709 UTC [3282176] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 21:34:06,709 UTC [3282176] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_no_data/Global_Ocean_surface_map 2023-05-11 21:34:06,709 UTC [3282176] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map/log.txt 2023-05-11 21:34:06,709 UTC [3282176] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map/settings.yml 2023-05-11 21:34:06,732 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:06,732 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:06,734 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:06,737 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:06,739 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:34:06,739 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:06,740 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:06,741 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:06,741 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:06,744 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:06,745 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', thresholds = [0.0, 5.0, 10.0, 15.0, 20.0, 25.0, 30.0], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'thetao', timerange = '2001/2004', variable_group = 'thetao', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:06,746 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:06,746 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:06,747 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:06,747 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:06,748 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,748 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,753 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:06,754 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:06,760 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,760 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,760 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,760 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29186 2023-05-11 21:34:06,762 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:06,764 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:06,768 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:06,770 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:06,772 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,775 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 21:34:06,775 UTC [3282169] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:34:06,794 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 9 tasks waiting for ancestors, 39/56 done 2023-05-11 21:34:06,820 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,820 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,820 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,820 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29589 2023-05-11 21:34:06,893 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:34:06,893 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,894 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,894 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:06,895 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/no3_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:06,895 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,895 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,895 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:06,901 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:06,904 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,904 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,904 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,904 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28841 2023-05-11 21:34:06,909 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:06,909 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,910 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:06,922 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc 2023-05-11 21:34:06,922 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:06,925 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:06,927 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:06,929 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:06,931 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:06,935 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:06,938 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_1.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:06,938 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_nitrate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:06,939 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:06,940 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:06,941 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:06,941 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:06,942 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,942 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,942 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,942 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28354 2023-05-11 21:34:06,944 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:06,945 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [10.0, 20.0, 30.0], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'no3', timerange = '2000/2000', variable_group = 'no3', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'no3', standard_name = 'mole_concentration_of_nitrate_in_sea_water', long_name = 'Dissolved Nitrate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:06,945 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:06,946 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'no3' 2023-05-11 21:34:06,946 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:06,947 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:06,947 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:06,948 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:06,952 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:06,953 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:06,959 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:06,961 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:06,964 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:06,965 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:06,967 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:06,970 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_no3_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc') 2023-05-11 21:34:06,970 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc 2023-05-11 21:34:06,976 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_10.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:06,980 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:06,980 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:06,980 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:06,980 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27827 2023-05-11 21:34:06,988 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:34:06,988 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:06,988 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:06,989 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/so_Omon_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:06,989 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:06,989 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:06,989 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:07,014 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_11.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,018 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,018 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,018 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,018 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29955 2023-05-11 21:34:07,021 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc 2023-05-11 21:34:07,021 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:07,023 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:07,026 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:07,028 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) 2023-05-11 21:34:07,028 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:07,029 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:07,030 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:07,031 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:07,033 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:07,034 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Omon', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'so', timerange = '2001/2004', variable_group = 'so', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'so', standard_name = 'sea_water_salinity', long_name = 'Sea Water Salinity', units = 'psu', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20110916' 2023-05-11 21:34:07,035 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:07,035 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'so' 2023-05-11 21:34:07,036 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:07,037 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:07,037 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:07,037 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:07,042 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:07,043 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:07,050 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:07,051 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:07,052 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_12.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,054 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:07,056 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:07,057 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,057 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,057 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,057 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30589 2023-05-11 21:34:07,058 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:07,059 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 21:34:07,059 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:34:07,091 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_13.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,094 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,095 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,095 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,095 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29744 2023-05-11 21:34:07,129 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_14.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,132 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,132 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,132 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,132 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30250 2023-05-11 21:34:07,166 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_2.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,171 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,171 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,171 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,171 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29852 2023-05-11 21:34:07,205 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_3.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,208 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,209 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,209 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,209 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28141 2023-05-11 21:34:07,243 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_4.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,247 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,247 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,247 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,247 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28823 2023-05-11 21:34:07,280 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_5.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,284 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,284 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,284 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,284 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28834 2023-05-11 21:34:07,318 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_6.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,322 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,322 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,322 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,322 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 30340 2023-05-11 21:34:07,356 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_7.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,360 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,360 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,360 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,360 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 29636 2023-05-11 21:34:07,394 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_8.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,398 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,398 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,398 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,398 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 28811 2023-05-11 21:34:07,432 UTC [3282171] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_scalars/mfo/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_scalars/Scalar_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_mfo_prep_timeseries_scalar_diag_timeseries_scalars_2001_2004_timeseries_9.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_scalars/Scalar_timeseries is a string but should be a list of strings 2023-05-11 21:34:07,435 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:07,436 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:07,436 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:07,436 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27957 2023-05-11 21:34:07,469 UTC [3282171] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_scalars/Scalar_timeseries took 1.9 seconds 2023-05-11 21:34:07,469 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_scalars/Scalar_timeseries (priority 21) in 0:00:12.956522 2023-05-11 21:34:07,523 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/no3 (priority 50) in 0:00:01.128025 2023-05-11 21:34:07,595 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 9 tasks waiting for ancestors, 40/56 done 2023-05-11 21:34:07,598 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/si in process [3282171] 2023-05-11 21:34:07,615 UTC [3282171] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:07,615 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:34:07,615 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:07,616 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:07,616 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:07,616 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:07,617 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:07,617 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:07,617 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:07,634 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:07,634 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:07,634 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:07,651 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc 2023-05-11 21:34:07,651 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:07,654 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:07,657 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:07,659 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:07,663 UTC [3282171] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:07,669 UTC [3282171] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:07,672 UTC [3282171] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_silicate_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:07,674 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:07,675 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:07,676 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:07,677 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:07,680 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:07,681 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'si', timerange = '2000/2000', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:07,681 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:07,682 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:07,682 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:07,683 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:07,683 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:07,684 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:07,688 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:07,690 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:07,696 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 8 tasks waiting for ancestors, 41/56 done 2023-05-11 21:34:07,696 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:07,697 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:07,698 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/o2 in process [3282172] 2023-05-11 21:34:07,701 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:07,702 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:07,704 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:07,707 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_si_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc') 2023-05-11 21:34:07,707 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc 2023-05-11 21:34:07,710 UTC [3282172] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:07,711 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:34:07,711 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:07,711 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:07,711 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:07,712 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:07,712 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:07,712 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:07,730 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:07,730 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:07,732 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:07,735 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:07,736 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:07,736 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:07,737 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:07,738 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:07,739 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:07,742 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:07,742 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'o2', timerange = '2001/2004', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:07,743 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:07,744 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:07,744 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:07,745 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:07,745 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:07,746 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:07,750 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:07,751 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:07,757 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:07,759 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:07,762 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:07,763 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:07,765 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:07,767 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/o2/o2_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc') 2023-05-11 21:34:07,768 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc 2023-05-11 21:34:07,796 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 7 tasks waiting for ancestors, 41/56 done 2023-05-11 21:34:08,188 UTC [3282172] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:34:08,188 UTC [3282172] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:08,188 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:08,189 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:08,189 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/o2_Oyr_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:08,189 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:08,189 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:08,190 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:08,204 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:08,204 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:08,204 UTC [3282172] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:08,216 UTC [3282172] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc 2023-05-11 21:34:08,216 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:08,219 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:08,221 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:08,223 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:08,225 UTC [3282172] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:08,230 UTC [3282172] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:08,232 UTC [3282172] DEBUG esmvalcore.preprocessor._io:486 Cube mole_concentration_of_dissolved_molecular_oxygen_in_sea_water / (mol m-3) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Oyr' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:08,233 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:08,234 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:08,235 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:08,235 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:08,238 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:08,239 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', thresholds = [0.03], dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'o2', timerange = '2000/2000', variable_group = 'o2', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'o2', standard_name = 'mole_concentration_of_dissolved_molecular_oxygen_in_sea_water', long_name = 'Dissolved Oxygen Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr' 2023-05-11 21:34:08,239 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:08,240 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Oyr', frequency = 'yr', short_name = 'o2' 2023-05-11 21:34:08,240 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:08,241 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:08,241 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:08,242 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:08,246 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:08,247 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:08,254 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:08,255 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:08,258 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:08,259 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:08,261 UTC [3282172] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:08,264 UTC [3282172] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Oyr_o2_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc') 2023-05-11 21:34:08,264 UTC [3282172] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc 2023-05-11 21:34:08,277 UTC [3282171] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:34:08,277 UTC [3282171] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:08,277 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:08,278 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/si_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,278 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:08,278 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:08,278 UTC [3282171] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,312 UTC [3282171] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,312 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:08,314 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,318 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:08,320 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:08,320 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:08,321 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:08,322 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:08,323 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:08,326 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:08,327 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'si', timerange = '2001/2004', variable_group = 'si', diagnostic = 'diag_transect_vs_WOA', recipe_dataset_index = 0, alias = 'CMIP5', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'si', standard_name = 'mole_concentration_of_silicate_in_sea_water', long_name = 'Dissolved Silicate Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,327 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:08,328 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'si' 2023-05-11 21:34:08,328 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:08,329 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:08,329 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:08,330 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:08,334 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:08,336 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:08,342 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:08,344 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:08,349 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:08,349 UTC [3282169] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/thetao (priority 48) in 0:00:02.355955 2023-05-11 21:34:08,350 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:08,353 UTC [3282171] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:08,355 UTC [3282171] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/si/si_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc') 2023-05-11 21:34:08,355 UTC [3282171] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc 2023-05-11 21:34:08,498 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 7 tasks waiting for ancestors, 42/56 done 2023-05-11 21:34:08,500 UTC [3282169] INFO esmvalcore._task:259 Starting task diag_transect_no_data/chl in process [3282169] 2023-05-11 21:34:08,504 UTC [3282169] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:08,504 UTC [3282169] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:34:08,504 UTC [3282169] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:08,504 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:08,505 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/chl_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,505 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:08,505 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:08,505 UTC [3282169] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,525 UTC [3282169] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,525 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:08,526 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,529 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:08,531 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:08,531 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:08,531 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:34:08,532 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:08,533 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:08,536 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:08,537 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'chl', timerange = '2001/2004', variable_group = 'chl', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'chl', standard_name = 'mass_concentration_of_phytoplankton_expressed_as_chlorophyll_in_sea_water', long_name = 'Total Chlorophyll Mass Concentration', units = 'kg m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,537 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:08,538 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'chl' 2023-05-11 21:34:08,538 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:08,539 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:08,539 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:08,540 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:08,544 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:08,545 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:08,552 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:08,553 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:08,556 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:08,558 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:08,560 UTC [3282169] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:08,562 UTC [3282169] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/chl/chl_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc') 2023-05-11 21:34:08,562 UTC [3282169] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/chl/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_chl_2001-2004.nc 2023-05-11 21:34:08,573 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/so (priority 49) in 0:00:02.279041 2023-05-11 21:34:08,598 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 6 tasks waiting for ancestors, 42/56 done 2023-05-11 21:34:08,699 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 6 tasks waiting for ancestors, 43/56 done 2023-05-11 21:34:08,701 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_transect_no_data/dfe in process [3282174] 2023-05-11 21:34:08,704 UTC [3282174] DEBUG esmvalcore.preprocessor:660 Running block ['climate_statistics', 'extract_region', 'regrid', 'extract_transect'] 2023-05-11 21:34:08,704 UTC [3282174] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:34:08,704 UTC [3282174] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:08,705 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:08,705 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/dfe_Oyr_CMIP5_HadGEM2-ES_historical_r1i1p1_v20110916_'), add_unique_suffix = True, preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,705 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:08,705 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:08,705 UTC [3282174] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,726 UTC [3282174] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc 2023-05-11 21:34:08,726 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:08,728 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,731 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:08,732 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) 2023-05-11 21:34:08,733 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:08,733 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:34:08,734 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:08,735 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) timerange = '2001/2004' 2023-05-11 21:34:08,738 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:08,739 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , preprocessor = 'prep_transect_AMT', mip = 'Oyr', dataset = 'HadGEM2-ES', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'dfe', timerange = '2001/2004', variable_group = 'dfe', diagnostic = 'diag_transect_no_data', recipe_dataset_index = 0, alias = 'HadGEM2-ES', product = ['output1', 'output2'], institute = ['INPE', 'MOHC'], original_short_name = 'dfe', standard_name = 'mole_concentration_of_dissolved_iron_in_sea_water', long_name = 'Dissolved Iron Concentration', units = 'mol m-3', modeling_realm = ['ocnBgchem'], frequency = 'yr', version = 'v20110916' 2023-05-11 21:34:08,739 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:08,740 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Oyr', frequency = 'yr', short_name = 'dfe' 2023-05-11 21:34:08,740 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:08,741 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:08,741 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:08,742 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:08,746 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_region 2023-05-11 21:34:08,748 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_region' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) start_longitude = 320.0, end_longitude = 345.0, start_latitude = -81.0, end_latitude = 89.9 2023-05-11 21:34:08,755 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:08,757 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:08,760 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_transect 2023-05-11 21:34:08,761 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_transect' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) longitude = 332.0 2023-05-11 21:34:08,763 UTC [3282174] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:08,765 UTC [3282174] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/yr/ocnBgchem/Oyr/r1i1p1/v20110916/dfe/dfe_Oyr_HadGEM2-ES_historical_r1i1p1_1960-2005.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc') 2023-05-11 21:34:08,766 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/si (priority 51) in 0:00:01.167566 2023-05-11 21:34:08,766 UTC [3282174] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_transect_no_data/dfe/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_dfe_2001-2004.nc 2023-05-11 21:34:08,799 UTC [3282027] INFO esmvalcore._task:778 Progress: 8 tasks running, 5 tasks waiting for ancestors, 43/56 done 2023-05-11 21:34:08,814 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/o2 (priority 52) in 0:00:01.115706 2023-05-11 21:34:08,900 UTC [3282027] INFO esmvalcore._task:778 Progress: 7 tasks running, 5 tasks waiting for ancestors, 44/56 done 2023-05-11 21:34:08,959 UTC [3282169] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/chl (priority 54) in 0:00:00.457974 2023-05-11 21:34:09,001 UTC [3282027] INFO esmvalcore._task:778 Progress: 6 tasks running, 5 tasks waiting for ancestors, 45/56 done 2023-05-11 21:34:09,015 UTC [3282171] INFO esmvalcore._task:259 Starting task diag_transect_vs_WOA/Transects_vs_WOA in process [3282171] 2023-05-11 21:34:09,018 UTC [3282171] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA/settings.yml'] 2023-05-11 21:34:09,019 UTC [3282171] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:09,019 UTC [3282171] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 21:34:09,019 UTC [3282171] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 21:34:09,019 UTC [3282171] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_transect_vs_WOA/Transects_vs_WOA 2023-05-11 21:34:09,019 UTC [3282171] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA/log.txt 2023-05-11 21:34:09,019 UTC [3282171] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA/settings.yml 2023-05-11 21:34:09,101 UTC [3282027] INFO esmvalcore._task:778 Progress: 6 tasks running, 4 tasks waiting for ancestors, 46/56 done 2023-05-11 21:34:09,170 UTC [3282173] DEBUG esmvalcore.preprocessor._supplementary_vars:142 Added areacello as cell measure in cube of so. 2023-05-11 21:34:09,171 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step area_statistics 2023-05-11 21:34:09,192 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'area_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:09,273 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/dfe (priority 55) in 0:00:00.571934 2023-05-11 21:34:09,336 UTC [3282173] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:09,338 UTC [3282173] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/fx/ocean/fx/r0i0p0/v20130612/areacello/areacello_fx_HadGEM2-ES_historical_r0i0p0.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 21:34:09,338 UTC [3282173] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:34:09,361 UTC [3282173] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/so (priority 16) in 0:00:16.556215 2023-05-11 21:34:09,402 UTC [3282027] INFO esmvalcore._task:778 Progress: 5 tasks running, 4 tasks waiting for ancestors, 47/56 done 2023-05-11 21:34:09,410 UTC [3282172] INFO esmvalcore._task:259 Starting task diag_transect_no_data/Transects_no_data in process [3282172] 2023-05-11 21:34:09,413 UTC [3282172] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data/settings.yml'] 2023-05-11 21:34:09,413 UTC [3282172] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:09,413 UTC [3282172] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data 2023-05-11 21:34:09,413 UTC [3282172] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_transect_no_data/Transects_no_data 2023-05-11 21:34:09,413 UTC [3282172] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_transect_no_data/Transects_no_data 2023-05-11 21:34:09,413 UTC [3282172] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data/log.txt 2023-05-11 21:34:09,413 UTC [3282172] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_transects.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data/settings.yml 2023-05-11 21:34:09,503 UTC [3282027] INFO esmvalcore._task:778 Progress: 5 tasks running, 3 tasks waiting for ancestors, 48/56 done 2023-05-11 21:34:09,524 UTC [3282169] INFO esmvalcore._task:259 Starting task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries in process [3282169] 2023-05-11 21:34:09,528 UTC [3282169] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml'] 2023-05-11 21:34:09,528 UTC [3282169] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:09,528 UTC [3282169] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:34:09,528 UTC [3282169] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:34:09,528 UTC [3282169] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries 2023-05-11 21:34:09,528 UTC [3282169] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/log.txt 2023-05-11 21:34:09,528 UTC [3282169] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_timeseries.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/settings.yml 2023-05-11 21:34:09,603 UTC [3282027] INFO esmvalcore._task:778 Progress: 6 tasks running, 2 tasks waiting for ancestors, 48/56 done 2023-05-11 21:34:11,863 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:11,864 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:11,887 UTC [3282170] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:11,887 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:11,889 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:11,900 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:11,902 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/thetao/thetao_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc') 2023-05-11 21:34:11,902 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc 2023-05-11 21:34:11,920 UTC [3282170] DEBUG esmvalcore.preprocessor:667 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:11,920 UTC [3282170] DEBUG esmvalcore.esgf._download:535 All required data is available locally, not downloading anything. 2023-05-11 21:34:11,920 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_file 2023-05-11 21:34:11,920 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:11,921 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/fixed_files/thetao_Omon_OBS_WOA_2013v2_'), add_unique_suffix = True, preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:11,921 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step load 2023-05-11 21:34:11,921 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:11,921 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:11,935 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:11,935 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc') loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) callback = 'default' 2023-05-11 21:34:11,935 UTC [3282170] DEBUG esmvalcore.preprocessor._io:152 Loading: /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:11,947 UTC [3282170] DEBUG esmvalcore.preprocessor._io:182 Done with loading /projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc 2023-05-11 21:34:11,947 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_metadata 2023-05-11 21:34:11,950 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:11,952 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step concatenate 2023-05-11 21:34:11,954 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) 2023-05-11 21:34:11,956 UTC [3282170] DEBUG esmvalcore.preprocessor._io:458 Will attempt to concatenate cubes sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' and sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' in this order 2023-05-11 21:34:11,961 UTC [3282170] DEBUG esmvalcore.preprocessor._io:483 Both cubes start at the same time but cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' ends before sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' 2023-05-11 21:34:11,963 UTC [3282170] DEBUG esmvalcore.preprocessor._io:486 Cube sea_water_potential_temperature / (K) (time: 1; depth: 102; latitude: 180; longitude: 360) Dimension coordinates: time x - - - depth - x - - latitude - - x - longitude - - - x Cell methods: mean area mean depth mean time Attributes: Conventions 'CF-1.5' host 'unknown host' mip 'Omon' modeling_realm 'clim' project_id 'CMIP5' reference 'Locarnini et al., World Ocean Atlas 2013, Vol. 1: Temperature, 2013.' source 'https://data.nodc.noaa.gov/woa/WOA13/DATAv2/' tier '2' title 'WOA data reformatted for ESMValTool v2.0a2' user 'hca063' version '2013v2' contains all needed data so using it fully 2023-05-11 21:34:11,964 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_metadata 2023-05-11 21:34:11,965 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:11,966 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step clip_timerange 2023-05-11 21:34:11,966 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) timerange = '2000/2000' 2023-05-11 21:34:11,969 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step fix_data 2023-05-11 21:34:11,970 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , preprocessor = 'prep_surface_map_regrid_3D', mip = 'Omon', dataset = 'WOA', project = 'OBS', type = 'clim', version = '2013v2', tier = 2, short_name = 'thetao', timerange = '2000/2000', variable_group = 'thetao', diagnostic = 'diag_surface_maps_vs_WOA', recipe_dataset_index = 1, alias = 'OBS', original_short_name = 'thetao', standard_name = 'sea_water_potential_temperature', long_name = 'Sea Water Potential Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon' 2023-05-11 21:34:11,970 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step cmor_check_data 2023-05-11 21:34:11,971 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) check_level = , cmor_table = 'OBS', mip = 'Omon', frequency = 'mon', short_name = 'thetao' 2023-05-11 21:34:11,971 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step add_supplementary_variables 2023-05-11 21:34:11,972 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) supplementary_cubes = [] 2023-05-11 21:34:11,972 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step extract_levels 2023-05-11 21:34:11,973 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'extract_levels' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) levels = [0.0], scheme = 'linear_extrapolate' 2023-05-11 21:34:11,975 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:11,976 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:11,980 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:11,981 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:11,983 UTC [3282170] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:11,985 UTC [3282170] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9252K/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/obsdata/Tier2/WOA/OBS_WOA_clim_2013v2_Omon_thetao_200001-200012.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc') 2023-05-11 21:34:11,985 UTC [3282170] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc 2023-05-11 21:34:12,034 UTC [3282170] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/thetao (priority 35) in 0:00:13.967152 2023-05-11 21:34:12,207 UTC [3282027] INFO esmvalcore._task:778 Progress: 5 tasks running, 2 tasks waiting for ancestors, 49/56 done 2023-05-11 21:34:14,428 UTC [3282172] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:14,428 UTC [3282172] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:14,429 UTC [3282172] DEBUG esmvalcore._task:589 Script ocean/diagnostic_transects.py completed successfully 2023-05-11 21:34:14,429 UTC [3282172] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_no_data/Transects_no_data/diagnostic_provenance.yml 2023-05-11 21:34:14,440 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:14,440 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:14,440 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:14,440 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55742 2023-05-11 21:34:14,481 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:14,481 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:14,481 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:14,481 UTC [3282172] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 46941 2023-05-11 21:34:14,518 UTC [3282172] DEBUG esmvalcore._task:683 Collecting provenance of task diag_transect_no_data/Transects_no_data took 0.1 seconds 2023-05-11 21:34:14,518 UTC [3282172] INFO esmvalcore._task:264 Successfully completed task diag_transect_no_data/Transects_no_data (priority 53) in 0:00:05.107614 2023-05-11 21:34:14,710 UTC [3282027] INFO esmvalcore._task:778 Progress: 4 tasks running, 2 tasks waiting for ancestors, 50/56 done 2023-05-11 21:34:17,550 UTC [3282169] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:17,551 UTC [3282169] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:17,551 UTC [3282169] DEBUG esmvalcore._task:589 Script ocean/diagnostic_timeseries.py completed successfully 2023-05-11 21:34:17,551 UTC [3282169] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diagnostic_provenance.yml 2023-05-11 21:34:17,597 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,598 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,598 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,598 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 25417 2023-05-11 21:34:17,661 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,661 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,661 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,661 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 37856 2023-05-11 21:34:17,731 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,731 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,731 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,731 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 18271 2023-05-11 21:34:17,792 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,792 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,792 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,792 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15382 2023-05-11 21:34:17,851 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,851 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,851 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,851 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 52178 2023-05-11 21:34:17,910 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:17,914 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,914 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,915 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,915 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39563 2023-05-11 21:34:17,950 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_thetao_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:17,954 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,954 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,954 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,954 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 42312 2023-05-11 21:34:17,989 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_no3_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:17,994 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:17,994 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:17,994 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:17,994 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 31450 2023-05-11 21:34:18,029 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_o2_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,034 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,034 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,034 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,034 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32415 2023-05-11 21:34:18,069 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_2001-2004.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_CMIP5_HadGEM2-ES_Oyr_historical_r1i1p1_si_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2001_2004_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,074 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,074 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,074 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,074 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 27636 2023-05-11 21:34:18,108 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/so/OBS_WOA_clim_2013v2_Omon_so_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_so_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,113 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,113 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,113 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,113 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 13714 2023-05-11 21:34:18,142 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/thetao/OBS_WOA_clim_2013v2_Omon_thetao_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Omon_thetao_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,146 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,146 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,146 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,146 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19348 2023-05-11 21:34:18,176 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/no3/OBS_WOA_clim_2013v2_Oyr_no3_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_no3_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,180 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,180 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,180 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,180 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 15284 2023-05-11 21:34:18,209 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/o2/OBS_WOA_clim_2013v2_Oyr_o2_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_o2_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,213 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,213 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,213 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,213 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 17033 2023-05-11 21:34:18,242 UTC [3282169] WARNING esmvalcore._task:651 Ancestor file(s) /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_timeseries_surface_average_vs_WOA/si/OBS_WOA_clim_2013v2_Oyr_si_2000-2000.nc specified for recording provenance of /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries/diag_OBS_WOA_Oyr_si_prep_global_Surface_average_timeseries_3D_diag_timeseries_surface_average_vs_WOA_2000_2000_timeseries_0.png, created by diagnostic script ocean/diagnostic_timeseries.py in task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries is a string but should be a list of strings 2023-05-11 21:34:18,246 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:18,246 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:18,246 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:18,246 UTC [3282169] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 16557 2023-05-11 21:34:18,276 UTC [3282169] DEBUG esmvalcore._task:683 Collecting provenance of task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries took 0.7 seconds 2023-05-11 21:34:18,276 UTC [3282169] INFO esmvalcore._task:264 Successfully completed task diag_timeseries_surface_average_vs_WOA/Global_Volume_Average_timeseries (priority 14) in 0:00:08.751706 2023-05-11 21:34:18,578 UTC [3282027] INFO esmvalcore._task:778 Progress: 3 tasks running, 2 tasks waiting for ancestors, 51/56 done 2023-05-11 21:34:18,782 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step climate_statistics 2023-05-11 21:34:18,784 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'climate_statistics' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) operator = 'mean' 2023-05-11 21:34:18,808 UTC [3282175] DEBUG esmvalcore.preprocessor._time:764 climate_statistics changed dtype from float32 to float64, changing back 2023-05-11 21:34:18,808 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step regrid 2023-05-11 21:34:18,810 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2023-05-11 21:34:18,821 UTC [3282175] DEBUG esmvalcore.preprocessor:369 Running preprocessor step save 2023-05-11 21:34:18,823 UTC [3282175] DEBUG esmvalcore.preprocessor:323 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MOHC/HadGEM2-ES/historical/mon/ocean/Omon/r1i1p1/v20110916/so/so_Omon_HadGEM2-ES_historical_r1i1p1_199912-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc') 2023-05-11 21:34:18,823 UTC [3282175] DEBUG esmvalcore.preprocessor._io:307 Saving cubes [] to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/preproc/diag_surface_maps_vs_WOA/so/CMIP5_HadGEM2-ES_Omon_historical_r1i1p1_so_2001-2004.nc 2023-05-11 21:34:18,846 UTC [3282175] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/so (priority 36) in 0:00:18.974377 2023-05-11 21:34:18,979 UTC [3282027] INFO esmvalcore._task:778 Progress: 2 tasks running, 2 tasks waiting for ancestors, 52/56 done 2023-05-11 21:34:18,996 UTC [3282174] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_surface_map in process [3282174] 2023-05-11 21:34:18,999 UTC [3282174] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml'] 2023-05-11 21:34:18,999 UTC [3282174] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:18,999 UTC [3282174] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 21:34:19,000 UTC [3282174] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 21:34:19,000 UTC [3282174] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_vs_WOA/Global_Ocean_surface_map 2023-05-11 21:34:19,000 UTC [3282174] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/log.txt 2023-05-11 21:34:19,000 UTC [3282174] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/settings.yml 2023-05-11 21:34:19,004 UTC [3282173] INFO esmvalcore._task:259 Starting task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs in process [3282173] 2023-05-11 21:34:19,008 UTC [3282173] INFO esmvalcore._task:500 Running command ['/conda/esmvaltool/2.8.0/bin/python', '/conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_model_vs_obs.py', '/projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/settings.yml'] 2023-05-11 21:34:19,008 UTC [3282173] DEBUG esmvalcore._task:501 in environment {'MPLBACKEND': 'Agg'} 2023-05-11 21:34:19,008 UTC [3282173] DEBUG esmvalcore._task:503 in current working directory: /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 21:34:19,008 UTC [3282173] INFO esmvalcore._task:504 Writing output to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/work/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 21:34:19,008 UTC [3282173] INFO esmvalcore._task:505 Writing plots to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/plots/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs 2023-05-11 21:34:19,008 UTC [3282173] INFO esmvalcore._task:506 Writing log to /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/log.txt 2023-05-11 21:34:19,009 UTC [3282173] INFO esmvalcore._task:516 To re-run this diagnostic script, run: cd /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs; MPLBACKEND="Agg" /conda/esmvaltool/2.8.0/bin/python /conda/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_model_vs_obs.py /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/settings.yml 2023-05-11 21:34:19,079 UTC [3282027] INFO esmvalcore._task:778 Progress: 4 tasks running, 0 tasks waiting for ancestors, 52/56 done 2023-05-11 21:34:28,080 UTC [3282171] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.6 GB 2023-05-11 21:34:28,081 UTC [3282171] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:28,081 UTC [3282171] DEBUG esmvalcore._task:589 Script ocean/diagnostic_transects.py completed successfully 2023-05-11 21:34:28,082 UTC [3282171] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_transect_vs_WOA/Transects_vs_WOA/diagnostic_provenance.yml 2023-05-11 21:34:28,152 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,152 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,152 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,152 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,220 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,220 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,220 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,220 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,289 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,289 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,289 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,289 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,363 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,363 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,363 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,363 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 24429 2023-05-11 21:34:28,424 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,424 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,424 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,424 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 54096 2023-05-11 21:34:28,484 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,484 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,484 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,484 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,554 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,554 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,554 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,555 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,626 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,626 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,626 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,626 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:28,695 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:28,695 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:28,695 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:28,695 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,076 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,077 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,077 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,077 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,144 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,144 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,144 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,144 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,214 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,214 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,214 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,214 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 41688 2023-05-11 21:34:29,253 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,253 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,253 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,253 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 59861 2023-05-11 21:34:29,292 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,292 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,292 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,292 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,350 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,350 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,350 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,350 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55379 2023-05-11 21:34:29,390 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,390 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,390 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,390 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,434 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,434 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,434 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,434 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55944 2023-05-11 21:34:29,473 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,473 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,473 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,473 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 21584 2023-05-11 21:34:29,510 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,510 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,510 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,510 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 55287 2023-05-11 21:34:29,551 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,551 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,551 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,551 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,599 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,599 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,599 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,599 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 38974 2023-05-11 21:34:29,637 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,637 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,637 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,637 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,681 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,681 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,681 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,681 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39224 2023-05-11 21:34:29,719 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,719 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,719 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,719 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:29,761 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,761 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,761 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,761 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39798 2023-05-11 21:34:29,798 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,798 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,798 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,798 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 19864 2023-05-11 21:34:29,834 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:29,834 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:29,834 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:29,834 UTC [3282171] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 39469 2023-05-11 21:34:29,871 UTC [3282171] DEBUG esmvalcore._task:683 Collecting provenance of task diag_transect_vs_WOA/Transects_vs_WOA took 1.8 seconds 2023-05-11 21:34:29,871 UTC [3282171] INFO esmvalcore._task:264 Successfully completed task diag_transect_vs_WOA/Transects_vs_WOA (priority 47) in 0:00:20.855723 2023-05-11 21:34:29,992 UTC [3282027] INFO esmvalcore._task:778 Progress: 3 tasks running, 0 tasks waiting for ancestors, 53/56 done 2023-05-11 21:34:45,082 UTC [3282174] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-11 21:34:45,082 UTC [3282174] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:45,082 UTC [3282174] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-11 21:34:45,083 UTC [3282174] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-11 21:34:45,112 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,112 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,112 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,112 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,158 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,158 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,158 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,158 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,204 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,204 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,204 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,204 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,248 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,248 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,249 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,249 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,294 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,294 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,294 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,294 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,337 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,337 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,338 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,338 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,378 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,378 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,379 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,379 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,421 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,421 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,421 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,422 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,466 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,466 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,466 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,467 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,510 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,511 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,511 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,511 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,554 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:45,555 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:45,555 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:45,555 UTC [3282174] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:45,592 UTC [3282174] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_surface_map took 0.5 seconds 2023-05-11 21:34:45,592 UTC [3282174] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_surface_map (priority 33) in 0:00:26.596047 2023-05-11 21:34:45,712 UTC [3282027] INFO esmvalcore._task:778 Progress: 2 tasks running, 0 tasks waiting for ancestors, 54/56 done 2023-05-11 21:34:47,097 UTC [3282173] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-11 21:34:47,098 UTC [3282173] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:34:47,098 UTC [3282173] DEBUG esmvalcore._task:589 Script ocean/diagnostic_model_vs_obs.py completed successfully 2023-05-11 21:34:47,098 UTC [3282173] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs/diagnostic_provenance.yml 2023-05-11 21:34:47,133 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:47,133 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:47,133 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:47,133 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:47,393 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:47,393 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:47,393 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:47,393 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:47,641 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:47,641 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:47,641 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:47,641 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 32319 2023-05-11 21:34:47,698 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:47,698 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:47,698 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:47,698 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:47,947 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:47,947 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:47,947 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:47,947 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 35957 2023-05-11 21:34:48,006 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:48,006 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:48,007 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:48,007 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:48,250 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:48,250 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:48,251 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:48,251 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:34:48,494 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:34:48,495 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:34:48,495 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:34:48,495 UTC [3282173] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 33711 2023-05-11 21:34:48,542 UTC [3282173] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs took 1.4 seconds 2023-05-11 21:34:48,542 UTC [3282173] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_vs_WOA/Global_Ocean_model_vs_obs (priority 34) in 0:00:29.537269 2023-05-11 21:34:48,716 UTC [3282027] INFO esmvalcore._task:778 Progress: 1 tasks running, 0 tasks waiting for ancestors, 55/56 done 2023-05-11 21:35:16,948 UTC [3282176] INFO esmvalcore._task:126 Maximum memory used (estimate): 0.7 GB 2023-05-11 21:35:16,948 UTC [3282176] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:35:16,948 UTC [3282176] DEBUG esmvalcore._task:589 Script ocean/diagnostic_maps.py completed successfully 2023-05-11 21:35:16,949 UTC [3282176] DEBUG esmvalcore._task:608 Collecting provenance from /projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/diag_surface_maps_no_data/Global_Ocean_surface_map/diagnostic_provenance.yml 2023-05-11 21:35:16,969 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:35:16,969 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:35:16,970 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:35:16,970 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:35:17,022 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:35:17,022 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:35:17,022 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:35:17,022 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:35:17,069 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:35:17,069 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:35:17,069 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:35:17,069 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:35:17,115 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:35:17,115 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:35:17,115 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:35:17,116 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:35:17,156 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IHDR' 16 13 2023-05-11 21:35:17,156 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'tEXt' 41 57 2023-05-11 21:35:17,156 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'pHYs' 110 9 2023-05-11 21:35:17,156 UTC [3282176] DEBUG PIL.PngImagePlugin:201 STREAM b'IDAT' 131 65536 2023-05-11 21:35:17,191 UTC [3282176] DEBUG esmvalcore._task:683 Collecting provenance of task diag_surface_maps_no_data/Global_Ocean_surface_map took 0.2 seconds 2023-05-11 21:35:17,191 UTC [3282176] INFO esmvalcore._task:264 Successfully completed task diag_surface_maps_no_data/Global_Ocean_surface_map (priority 41) in 0:01:10.484792 2023-05-11 21:35:17,248 UTC [3282027] INFO esmvalcore._task:778 Progress: 0 tasks running, 0 tasks waiting for ancestors, 56/56 done 2023-05-11 21:35:17,249 UTC [3282027] INFO esmvalcore._task:783 Successfully completed all tasks. 2023-05-11 21:35:17,320 UTC [3282027] INFO esmvalcore._recipe.recipe:1309 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/run/recipe_ocean_bgc_filled.yml 2023-05-11 21:35:17,418 UTC [3282027] INFO esmvalcore.experimental.recipe_output:205 Wrote recipe output to: file:///projects/NS2980K/www/yanchun/esmvaltool2.8.0/recipe_ocean_bgc_20230511_213349/index.html 2023-05-11 21:35:17,418 UTC [3282027] INFO esmvalcore._main:125 Ending the Earth System Model Evaluation Tool at time: 2023-05-11 21:35:17 UTC 2023-05-11 21:35:17,418 UTC [3282027] INFO esmvalcore._main:128 Time for running the recipe was: 0:01:27.549880 2023-05-11 21:35:17,711 UTC [3282027] INFO esmvalcore._task:126 Maximum memory used (estimate): 18.0 GB 2023-05-11 21:35:17,712 UTC [3282027] INFO esmvalcore._task:128 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2023-05-11 21:35:17,713 UTC [3282027] INFO esmvalcore._main:453 Run was successful