documentation: title: Marine Biogeochemistry analysis suite description: 'Recipe to evaluate the marine biogeochemistry models of CMIP5. There are also some physical evaluation metrics here too. This work based on the BGC-val toolkit GMD-2018-103. DOI: https://doi.org/10.5194/gmd-11-4215-2018 Written by Lee de Mora, Plymouth Marine Laboratory, ledm@pml.ac.uk' authors: - demora_lee maintainer: - demora_lee references: - demora2018gmd projects: - ukesm preprocessors: prep_timeseries_global_volume_average: custom_order: true volume_statistics: operator: mean prep_global_Surface_average_timeseries_2D: custom_order: true area_statistics: operator: mean prep_global_Surface_average_timeseries_3D: custom_order: true extract_levels: levels: - 0.0 scheme: linear_extrapolate area_statistics: operator: mean prep_timeseries_scalar: custom_order: true prep_surface_map_2D: climate_statistics: operator: mean prep_surface_map_3D: extract_levels: levels: - 0.0 scheme: linear_extrapolate climate_statistics: operator: mean prep_surface_map_regrid_3D: custom_order: true extract_levels: levels: - 0.0 scheme: linear_extrapolate climate_statistics: operator: mean regrid: target_grid: 1x1 scheme: linear prep_global_profile: annual_statistics: operator: mean area_statistics: operator: mean prep_global_profile_decadal: decadal_statistics: operator: mean area_statistics: operator: mean prep_transect_AMT: custom_order: true climate_statistics: operator: mean extract_region: start_longitude: 320.0 end_longitude: 345.0 start_latitude: -81.0 end_latitude: 89.9 regrid: target_grid: 1x1 scheme: linear extract_transect: longitude: 332.0 default: {} diagnostics: diag_timeseries_volume_average_vs_WOA: description: Global volume average time series (WOA observations) variables: thetao: mip: Omon preprocessor: prep_timeseries_global_volume_average no3: mip: Oyr preprocessor: prep_timeseries_global_volume_average o2: mip: Oyr preprocessor: prep_timeseries_global_volume_average si: mip: Oyr preprocessor: prep_timeseries_global_volume_average scripts: Global_Volume_Average_timeseries: script: ocean/diagnostic_timeseries.py additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: volcello institute: MOHC product: &id001 - output1 - output2 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 diag_timeseries_volume_average_no_obs: description: Global volume average time series (No observations) variables: chl: exp: historical mip: Oyr preprocessor: prep_timeseries_global_volume_average project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: volcello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 dfe: exp: historical mip: Oyr preprocessor: prep_timeseries_global_volume_average project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: volcello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 talk: exp: historical mip: Oyr preprocessor: prep_timeseries_global_volume_average project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: volcello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 scripts: Global_Volume_verage_timeseries: script: ocean/diagnostic_timeseries.py additional_datasets: - dataset: HadGEM2-ES diag_timeseries_surface_average_no_obs: description: Global volume average time series - no data variables: talk: exp: historical mip: Oyr preprocessor: prep_global_Surface_average_timeseries_3D project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 intpp: exp: historical mip: Omon preprocessor: prep_global_Surface_average_timeseries_2D project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 chl: exp: historical mip: Oyr preprocessor: prep_global_Surface_average_timeseries_3D project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 thresholds: - 0.1 - 0.2 - 0.5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 areacello: exp: historical mip: fx project: CMIP5 version: v20130612 ensemble: r0i0p0 scripts: Global_Volume_Average_timeseries: script: ocean/diagnostic_timeseries.py additional_datasets: - dataset: HadGEM2-ES diag_timeseries_surface_average_vs_WOA: description: Global surface time series (WOA observations) variables: thetao: mip: Omon preprocessor: prep_global_Surface_average_timeseries_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 so: mip: Omon preprocessor: prep_global_Surface_average_timeseries_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 no3: mip: Oyr preprocessor: prep_global_Surface_average_timeseries_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 o2: mip: Oyr preprocessor: prep_global_Surface_average_timeseries_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 si: mip: Oyr preprocessor: prep_global_Surface_average_timeseries_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 areacello: exp: historical mip: fx project: CMIP5 version: v20130612 ensemble: r0i0p0 additional_datasets: - dataset: HadGEM2-ES scripts: Global_Volume_Average_timeseries: script: ocean/diagnostic_timeseries.py observational_dataset: dataset: WOA project: OBS diag_timeseries_scalars: description: Scalar time series variables: mfo: exp: historical mip: Omon preprocessor: prep_timeseries_scalar project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 scripts: Scalar_timeseries: script: ocean/diagnostic_timeseries.py additional_datasets: - dataset: HadGEM2-ES diag_profile_vs_WOA: description: Global profile (WOA observations) variables: thetao: mip: Omon preprocessor: prep_global_profile so: mip: Omon preprocessor: prep_global_profile no3: mip: Oyr preprocessor: prep_global_profile o2: mip: Oyr preprocessor: prep_global_profile si: mip: Oyr preprocessor: prep_global_profile scripts: Global_profile_vs_WOA: script: ocean/diagnostic_profiles.py observational_dataset: dataset: WOA project: OBS additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 diag_profile_no_obs: description: Global profile (No observations) variables: chl: exp: historical mip: Oyr preprocessor: prep_global_profile project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 dfe: exp: historical mip: Oyr preprocessor: prep_global_profile project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 talk: exp: historical mip: Oyr preprocessor: prep_global_profile project: CMIP5 supplementary_variables: - mip: fx ensemble: r0i0p0 short_name: areacello institute: MOHC product: *id001 version: v20130612 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 scripts: Global_profile_no_obs: script: ocean/diagnostic_profiles.py additional_datasets: - dataset: HadGEM2-ES diag_surface_maps_vs_WOA: description: Global Ocean Surface maps vs WOA variables: thetao: mip: Omon preprocessor: prep_surface_map_regrid_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 so: mip: Omon preprocessor: prep_surface_map_regrid_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 no3: mip: Oyr preprocessor: prep_surface_map_regrid_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 si: mip: Oyr preprocessor: prep_surface_map_regrid_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 o2: mip: Oyr preprocessor: prep_surface_map_regrid_3D additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 areacello: exp: historical mip: fx project: CMIP5 version: v20130612 ensemble: r0i0p0 additional_datasets: - dataset: HadGEM2-ES scripts: Global_Ocean_surface_map: script: ocean/diagnostic_maps.py Global_Ocean_model_vs_obs: script: ocean/diagnostic_model_vs_obs.py observational_dataset: dataset: WOA project: OBS diag_surface_maps_no_data: description: Global Ocean Surface maps - no data variables: intpp: exp: historical mip: Omon preprocessor: prep_surface_map_2D project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 fgco2: exp: historical mip: Omon preprocessor: prep_surface_map_2D project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 chl: exp: historical mip: Oyr preprocessor: prep_surface_map_3D project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 dfe: exp: historical mip: Oyr preprocessor: prep_surface_map_3D project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 areacello: exp: historical mip: fx project: CMIP5 version: v20130612 ensemble: r0i0p0 scripts: Global_Ocean_surface_map: script: ocean/diagnostic_maps.py additional_datasets: - dataset: HadGEM2-ES diag_transect_vs_WOA: description: Transect maps vs WOA variables: thetao: mip: Omon preprocessor: prep_transect_AMT thresholds: - 0.0 - 5.0 - 10.0 - 15.0 - 20.0 - 25.0 - 30.0 so: mip: Omon preprocessor: prep_transect_AMT no3: mip: Oyr preprocessor: prep_transect_AMT thresholds: - 10.0 - 20.0 - 30.0 si: mip: Oyr preprocessor: prep_transect_AMT o2: mip: Oyr preprocessor: prep_transect_AMT thresholds: - 0.03 scripts: Transects_vs_WOA: script: ocean/diagnostic_transects.py additional_datasets: - dataset: HadGEM2-ES exp: historical project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 - dataset: WOA project: OBS tier: 2 timerange: 2000/2000 type: clim version: 2013v2 diag_transect_no_data: description: Transects - no data variables: chl: exp: historical mip: Oyr preprocessor: prep_transect_AMT project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 dfe: exp: historical mip: Oyr preprocessor: prep_transect_AMT project: CMIP5 timerange: 2001/2004 version: v20110916 ensemble: r1i1p1 scripts: Transects_no_data: script: ocean/diagnostic_transects.py additional_datasets: - dataset: HadGEM2-ES datasets: []