INFO [2082699] ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! INFO [2082699] Package versions INFO [2082699] ---------------- INFO [2082699] ESMValCore: 2.8.0 INFO [2082699] ESMValTool: 2.8.0 INFO [2082699] ---------------- INFO [2082699] Using config file /nird/home/tomast/.esmvaltool/config-user.yml INFO [2082699] Writing program log files to: /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/run/main_log.txt /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/run/main_log_debug.txt INFO [2082699] Using default ESGF configuration, configuration file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml not present. WARNING [2082699] ESGF credentials missing, only data that is accessible without logging in will be available. See https://esgf.github.io/esgf-user-support/user_guide.html for instructions on how to create an account if you do not have one yet. Next, configure your system so esmvaltool can use your credentials. This can be done using the keyring package, or you can just enter them in /nird/home/tomast/.esmvaltool/esgf-pyclient.yml. keyring ======= First install the keyring package (requires a supported backend, see https://pypi.org/project/keyring/): $ pip install keyring Next, set your username and password by running the commands: $ keyring set ESGF hostname $ keyring set ESGF username $ keyring set ESGF password To check that you entered your credentials correctly, run: $ keyring get ESGF hostname $ keyring get ESGF username $ keyring get ESGF password configuration file ================== You can store the hostname, username, and password or your OpenID account in a plain text in the file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml like this: logon: hostname: "your-hostname" username: "your-username" password: "your-password" or your can configure an interactive log in: logon: interactive: true Note that storing your password in plain text in the configuration file is less secure. On shared systems, make sure the permissions of the file are set so only you can read it, i.e. $ ls -l /nird/home/tomast/.esmvaltool/esgf-pyclient.yml shows permissions -rw-------. INFO [2082699] Starting the Earth System Model Evaluation Tool at time: 2023-07-05 08:30:01 UTC INFO [2082699] ---------------------------------------------------------------------- INFO [2082699] RECIPE = /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/new_recipes/recipe_ocean_arctic_bgc.yml INFO [2082699] RUNDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/run INFO [2082699] WORKDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/work INFO [2082699] PREPROCDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/preproc INFO [2082699] PLOTDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230705_083001/plots INFO [2082699] ---------------------------------------------------------------------- INFO [2082699] Running tasks using at most 256 processes INFO [2082699] If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. INFO [2082699] If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. INFO [2082699] Maximum memory used (estimate): 0.0 GB INFO [2082699] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. ERROR [2082699] Program terminated abnormally, see stack trace below for more information: Traceback (most recent call last): File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_main.py", line 521, in run fire.Fire(ESMValTool()) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/fire/core.py", line 141, in Fire component_trace = _Fire(component, args, parsed_flag_args, context, name) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/fire/core.py", line 475, in _Fire component, remaining_args = _CallAndUpdateTrace( File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/fire/core.py", line 691, in _CallAndUpdateTrace component = fn(*varargs, **kwargs) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_main.py", line 408, in run self._run(recipe, session) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_main.py", line 450, in _run process_recipe(recipe_file=recipe, session=session) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_main.py", line 119, in process_recipe recipe = read_recipe_file(recipe_file, session) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe.py", line 78, in read_recipe_file check.recipe_with_schema(filename) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/check.py", line 55, in recipe_with_schema yamale.validate(schema, recipe, strict=False) File "/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/yamale/yamale.py", line 43, in validate raise YamaleError(results) yamale.yamale_error.YamaleError: Error validating data '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/new_recipes/recipe_ocean_arctic_bgc.yml' with schema '/diagnostics/esmvaltool/2.8.0/lib/python3.10/site-packages/esmvalcore/_recipe/recipe_schema.yml' diagnostics.diag_ice_NHS_hist.scripts: '{'Global_seaice_timeseries': {'script': '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py', 'threshold': 15.0, 'lat_min': 40}, 'lat_min': 40}' is not a null. diagnostics.diag_ice_NHS_hist.scripts.lat_min : '40' is not a map INFO [2082699] If you have a question or need help, please start a new discussion on https://github.com/ESMValGroup/ESMValTool/discussions If you suspect this is a bug, please open an issue on https://github.com/ESMValGroup/ESMValTool/issues To make it easier to find out what the problem is, please consider attaching the files run/recipe_*.yml and run/main_log_debug.txt from the output directory.