INFO [1357537] ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! INFO [1357537] Package versions INFO [1357537] ---------------- INFO [1357537] ESMValCore: 2.8.0 INFO [1357537] ESMValTool: 2.8.0 INFO [1357537] ---------------- INFO [1357537] Using config file /nird/home/tomast/.esmvaltool/config-user.yml INFO [1357537] Writing program log files to: /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/main_log.txt /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/main_log_debug.txt INFO [1357537] Using default ESGF configuration, configuration file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml not present. WARNING [1357537] ESGF credentials missing, only data that is accessible without logging in will be available. See https://esgf.github.io/esgf-user-support/user_guide.html for instructions on how to create an account if you do not have one yet. Next, configure your system so esmvaltool can use your credentials. This can be done using the keyring package, or you can just enter them in /nird/home/tomast/.esmvaltool/esgf-pyclient.yml. keyring ======= First install the keyring package (requires a supported backend, see https://pypi.org/project/keyring/): $ pip install keyring Next, set your username and password by running the commands: $ keyring set ESGF hostname $ keyring set ESGF username $ keyring set ESGF password To check that you entered your credentials correctly, run: $ keyring get ESGF hostname $ keyring get ESGF username $ keyring get ESGF password configuration file ================== You can store the hostname, username, and password or your OpenID account in a plain text in the file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml like this: logon: hostname: "your-hostname" username: "your-username" password: "your-password" or your can configure an interactive log in: logon: interactive: true Note that storing your password in plain text in the configuration file is less secure. On shared systems, make sure the permissions of the file are set so only you can read it, i.e. $ ls -l /nird/home/tomast/.esmvaltool/esgf-pyclient.yml shows permissions -rw-------. INFO [1357537] Starting the Earth System Model Evaluation Tool at time: 2023-07-04 12:24:10 UTC INFO [1357537] ---------------------------------------------------------------------- INFO [1357537] RECIPE = /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/new_recipes/recipe_ocean_arctic_bgc.yml INFO [1357537] RUNDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run INFO [1357537] WORKDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/work INFO [1357537] PREPROCDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/preproc INFO [1357537] PLOTDIR = /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/plots INFO [1357537] ---------------------------------------------------------------------- INFO [1357537] Running tasks using at most 256 processes INFO [1357537] If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. INFO [1357537] If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. INFO [1357537] Creating tasks from recipe INFO [1357537] Creating tasks for diagnostic diag_ice_NHW INFO [1357537] Creating diagnostic task diag_ice_NHW/Global_seaice_timeseries INFO [1357537] Creating preprocessor task diag_ice_NHW/sic INFO [1357537] Creating preprocessor 'timeseries_NHW_ice_extent' task for variable 'sic' INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-M, historical, r1i1p1, v20120227 INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-ME, historical, r1i1p1, v20120225 INFO [1357537] PreprocessingTask diag_ice_NHW/sic created. INFO [1357537] Creating tasks for diagnostic diag_ice_NHS INFO [1357537] Creating diagnostic task diag_ice_NHS/Global_seaice_timeseries INFO [1357537] Creating preprocessor task diag_ice_NHS/sic INFO [1357537] Creating preprocessor 'timeseries_NHS_ice_extent' task for variable 'sic' INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-M, historical, r1i1p1, v20120227 INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-ME, historical, r1i1p1, v20120225 INFO [1357537] PreprocessingTask diag_ice_NHS/sic created. INFO [1357537] Creating tasks for diagnostic diag_ice_SHW INFO [1357537] Creating diagnostic task diag_ice_SHW/Global_seaice_timeseries INFO [1357537] Creating preprocessor task diag_ice_SHW/sic INFO [1357537] Creating preprocessor 'timeseries_SHW_ice_extent' task for variable 'sic' INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-M, historical, r1i1p1, v20120227 INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-ME, historical, r1i1p1, v20120225 INFO [1357537] PreprocessingTask diag_ice_SHW/sic created. INFO [1357537] Creating tasks for diagnostic diag_ice_SHS INFO [1357537] Creating diagnostic task diag_ice_SHS/Global_seaice_timeseries INFO [1357537] Creating preprocessor task diag_ice_SHS/sic INFO [1357537] Creating preprocessor 'timeseries_SHS_ice_extent' task for variable 'sic' INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-M, historical, r1i1p1, v20120227 INFO [1357537] Found input files for Dataset: sic, OImon, CMIP5, NorESM1-ME, historical, r1i1p1, v20120225 INFO [1357537] PreprocessingTask diag_ice_SHS/sic created. INFO [1357537] These tasks will be executed: diag_ice_SHW/Global_seaice_timeseries, diag_ice_NHS/Global_seaice_timeseries, diag_ice_NHW/sic, diag_ice_SHS/Global_seaice_timeseries, diag_ice_NHS/sic, diag_ice_SHW/sic, diag_ice_SHS/sic, diag_ice_NHW/Global_seaice_timeseries INFO [1357537] Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/recipe_ocean_arctic_bgc_filled.yml INFO [1357537] Running 8 tasks using 8 processes INFO [1357682] Starting task diag_ice_NHS/sic in process [1357682] INFO [1357681] Starting task diag_ice_NHW/sic in process [1357681] INFO [1357683] Starting task diag_ice_SHW/sic in process [1357683] INFO [1357684] Starting task diag_ice_SHS/sic in process [1357684] INFO [1357537] Progress: 4 tasks running, 4 tasks waiting for ancestors, 0/8 done INFO [1357683] Successfully completed task diag_ice_SHW/sic (priority 5) in 0:00:09.113302 INFO [1357684] Successfully completed task diag_ice_SHS/sic (priority 7) in 0:00:09.174290 INFO [1357682] Successfully completed task diag_ice_NHS/sic (priority 3) in 0:00:09.209991 INFO [1357681] Successfully completed task diag_ice_NHW/sic (priority 1) in 0:00:09.238842 INFO [1357537] Progress: 2 tasks running, 4 tasks waiting for ancestors, 2/8 done INFO [1357685] Starting task diag_ice_SHW/Global_seaice_timeseries in process [1357685] INFO [1357686] Starting task diag_ice_SHS/Global_seaice_timeseries in process [1357686] INFO [1357685] Running command ['/diagnostics/esmvaltool/2.8.0/bin/python', '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py', '/projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHW/Global_seaice_timeseries/settings.yml'] INFO [1357685] Writing output to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/work/diag_ice_SHW/Global_seaice_timeseries INFO [1357685] Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/plots/diag_ice_SHW/Global_seaice_timeseries INFO [1357685] Writing log to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHW/Global_seaice_timeseries/log.txt INFO [1357685] To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHW/Global_seaice_timeseries; MPLBACKEND="Agg" /diagnostics/esmvaltool/2.8.0/bin/python /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHW/Global_seaice_timeseries/settings.yml INFO [1357686] Running command ['/diagnostics/esmvaltool/2.8.0/bin/python', '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py', '/projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHS/Global_seaice_timeseries/settings.yml'] INFO [1357686] Writing output to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/work/diag_ice_SHS/Global_seaice_timeseries INFO [1357686] Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/plots/diag_ice_SHS/Global_seaice_timeseries INFO [1357686] Writing log to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHS/Global_seaice_timeseries/log.txt INFO [1357686] To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHS/Global_seaice_timeseries; MPLBACKEND="Agg" /diagnostics/esmvaltool/2.8.0/bin/python /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_SHS/Global_seaice_timeseries/settings.yml INFO [1357537] Progress: 2 tasks running, 2 tasks waiting for ancestors, 4/8 done INFO [1357687] Starting task diag_ice_NHW/Global_seaice_timeseries in process [1357687] INFO [1357688] Starting task diag_ice_NHS/Global_seaice_timeseries in process [1357688] INFO [1357537] Progress: 4 tasks running, 0 tasks waiting for ancestors, 4/8 done INFO [1357688] Running command ['/diagnostics/esmvaltool/2.8.0/bin/python', '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py', '/projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHS/Global_seaice_timeseries/settings.yml'] INFO [1357687] Running command ['/diagnostics/esmvaltool/2.8.0/bin/python', '/projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py', '/projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHW/Global_seaice_timeseries/settings.yml'] INFO [1357688] Writing output to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/work/diag_ice_NHS/Global_seaice_timeseries INFO [1357688] Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/plots/diag_ice_NHS/Global_seaice_timeseries INFO [1357687] Writing output to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/work/diag_ice_NHW/Global_seaice_timeseries INFO [1357688] Writing log to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHS/Global_seaice_timeseries/log.txt INFO [1357687] Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/plots/diag_ice_NHW/Global_seaice_timeseries INFO [1357688] To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHS/Global_seaice_timeseries; MPLBACKEND="Agg" /diagnostics/esmvaltool/2.8.0/bin/python /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHS/Global_seaice_timeseries/settings.yml INFO [1357687] Writing log to /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHW/Global_seaice_timeseries/log.txt INFO [1357687] To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHW/Global_seaice_timeseries; MPLBACKEND="Agg" /diagnostics/esmvaltool/2.8.0/bin/python /projects/NS2980K/home/tomast/ESMValTool/noresmvaltool/esmvaltool/diag_scripts/ocean/diagnostic_polar.py /projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/diag_ice_NHW/Global_seaice_timeseries/settings.yml INFO [1357685] Maximum memory used (estimate): 0.6 GB INFO [1357685] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1357685] Successfully completed task diag_ice_SHW/Global_seaice_timeseries (priority 4) in 0:00:16.098997 INFO [1357537] Progress: 3 tasks running, 0 tasks waiting for ancestors, 5/8 done INFO [1357687] Maximum memory used (estimate): 0.4 GB INFO [1357687] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1357687] Successfully completed task diag_ice_NHW/Global_seaice_timeseries (priority 0) in 0:00:18.133680 INFO [1357537] Progress: 2 tasks running, 0 tasks waiting for ancestors, 6/8 done INFO [1357686] Maximum memory used (estimate): 0.6 GB INFO [1357686] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1357686] Successfully completed task diag_ice_SHS/Global_seaice_timeseries (priority 6) in 0:00:20.055215 INFO [1357537] Progress: 1 tasks running, 0 tasks waiting for ancestors, 7/8 done INFO [1357688] Maximum memory used (estimate): 0.5 GB INFO [1357688] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1357688] Successfully completed task diag_ice_NHS/Global_seaice_timeseries (priority 2) in 0:00:21.148700 INFO [1357537] Progress: 0 tasks running, 0 tasks waiting for ancestors, 8/8 done INFO [1357537] Successfully completed all tasks. INFO [1357537] Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/run/recipe_ocean_arctic_bgc_filled.yml INFO [1357537] Wrote recipe output to: file:///projects/NS2980K/www/tomast/esmvaltool2.8.0/recipe_ocean_arctic_bgc_20230704_122409/index.html INFO [1357537] Ending the Earth System Model Evaluation Tool at time: 2023-07-04 12:24:41 UTC INFO [1357537] Time for running the recipe was: 0:00:31.101305 INFO [1357537] Maximum memory used (estimate): 6.2 GB INFO [1357537] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1357537] Removing `preproc` directory containing preprocessed data INFO [1357537] If this data is further needed, then set `remove_preproc_dir` to `false` in your user configuration file INFO [1357537] Run was successful