2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:90 Writing program log files to: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/run/main_log.txt /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/run/main_log_debug.txt /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/run/cmor_log.txt 2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:96 Starting the CMORization Tool at time: 2025-09-02 08:51:21 UTC 2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:101 ---------------------------------------------------------------------- 2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:102 input_dir = /projects/NS9560K-datalake/ESGF/rawdata/obs 2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:107 output_dir = /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121 2025-09-02 08:51:21,011 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:108 ---------------------------------------------------------------------- 2025-09-02 08:51:21,012 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:215 Running the CMORization scripts. 2025-09-02 08:51:21,012 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:224 Processing datasets ['WOA'] 2025-09-02 08:51:21,012 UTC [578664] DEBUG esmvalcore.config._dask:180 Using Dask profile 'local_threaded' 2025-09-02 08:51:21,012 UTC [578664] DEBUG esmvalcore.config._dask:184 Using additional Dask settings {'scheduler': 'threads'} 2025-09-02 08:51:21,013 UTC [578664] INFO esmvalcore.config._dask:206 Using Dask threaded scheduler. The distributed scheduler is recommended, please read https://docs.esmvaltool.org/projects/ESMValCore/en/latest/quickstart/configure.html#dask-configuration how to use a distributed scheduler. 2025-09-02 08:51:21,013 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:317 Input data from: /projects/NS9560K-datalake/ESGF/rawdata/obs/Tier2/WOA 2025-09-02 08:51:21,013 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:319 Output will be written to: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA 2025-09-02 08:51:21,013 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:326 Reformat script: /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/cmorizers/data/formatters/datasets/woa 2025-09-02 08:51:21,019 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:449 CMORizing dataset WOA using Python script /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/cmorizers/data/formatters/datasets/woa.py 2025-09-02 08:51:21,022 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var thetao from input set temperature 2025-09-02 08:51:21,131 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:21,135 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:21,137 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:21,140 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:21,149 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:21,149 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:21,151 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:21,151 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:21,152 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:21,154 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Omon_thetao_200007-200007.nc 2025-09-02 08:51:21,154 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,279 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:127 Extract surface OBS for tos 2025-09-02 08:51:21,283 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Omon_tos_200007-200007.nc 2025-09-02 08:51:21,283 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,328 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var so from input set salinity 2025-09-02 08:51:21,375 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:21,377 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:21,380 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:21,382 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:21,390 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:21,390 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:21,390 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:21,391 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:21,391 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:21,392 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Omon_so_200007-200007.nc 2025-09-02 08:51:21,392 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,512 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:127 Extract surface OBS for sos 2025-09-02 08:51:21,516 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Omon_sos_200007-200007.nc 2025-09-02 08:51:21,516 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,563 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var o2 from input set oxygen 2025-09-02 08:51:21,577 UTC [578664] WARNING py.warnings:110 /projects/NS2980K/conda/esmvaltool_v2.13.0rc1/lib/python3.13/site-packages/iris/loading.py:663: IrisLoadWarning: Not all file objects were parsed correctly. See iris.loading.LOAD_PROBLEMS for details. warnings.warn(message, category=IrisLoadWarning) 2025-09-02 08:51:21,611 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:21,616 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:21,619 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:21,621 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:21,629 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:21,630 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:21,631 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:21,631 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:21,631 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:21,631 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Oyr_o2_200001-200012.nc 2025-09-02 08:51:21,631 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,737 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var no3 from input set nitrate 2025-09-02 08:51:21,748 UTC [578664] WARNING py.warnings:110 /projects/NS2980K/conda/esmvaltool_v2.13.0rc1/lib/python3.13/site-packages/iris/loading.py:663: IrisLoadWarning: Not all file objects were parsed correctly. See iris.loading.LOAD_PROBLEMS for details. warnings.warn(message, category=IrisLoadWarning) 2025-09-02 08:51:21,784 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:21,787 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:21,789 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:21,792 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:21,800 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:21,801 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:21,801 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:21,802 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:21,802 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:21,802 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Oyr_no3_200001-200012.nc 2025-09-02 08:51:21,802 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:21,899 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var po4 from input set phosphate 2025-09-02 08:51:21,910 UTC [578664] WARNING py.warnings:110 /projects/NS2980K/conda/esmvaltool_v2.13.0rc1/lib/python3.13/site-packages/iris/loading.py:663: IrisLoadWarning: Not all file objects were parsed correctly. See iris.loading.LOAD_PROBLEMS for details. warnings.warn(message, category=IrisLoadWarning) 2025-09-02 08:51:21,945 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:21,948 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:21,951 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:21,953 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:21,961 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:21,962 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:21,962 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:21,962 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:21,962 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:21,963 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Oyr_po4_200001-200012.nc 2025-09-02 08:51:21,963 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:22,059 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:148 CMORizing var si from input set silicate 2025-09-02 08:51:22,070 UTC [578664] WARNING py.warnings:110 /projects/NS2980K/conda/esmvaltool_v2.13.0rc1/lib/python3.13/site-packages/iris/loading.py:663: IrisLoadWarning: Not all file objects were parsed correctly. See iris.loading.LOAD_PROBLEMS for details. warnings.warn(message, category=IrisLoadWarning) 2025-09-02 08:51:22,107 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:221 Fixing time... 2025-09-02 08:51:22,110 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:246 Fixing depth... 2025-09-02 08:51:22,113 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:238 Fixing latitude... 2025-09-02 08:51:22,115 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:230 Fixing longitude... 2025-09-02 08:51:22,123 UTC [578664] INFO esmvaltool.cmorizers.data.formatters.datasets.woa:54 Fixing data ... 2025-09-02 08:51:22,124 UTC [578664] DEBUG esmvaltool.cmorizers.data.utilities:414 Setting global metadata... 2025-09-02 08:51:22,124 UTC [578664] WARNING esmvaltool.cmorizers.data.utilities:401 The reference file /projects/NS2980K/home/tomast/ESMValTool/ESMValTool-TTfork/esmvaltool/references/woa2018.bibtex does not have a doi. 2025-09-02 08:51:22,124 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'depth' from 'float32' to 'float64' 2025-09-02 08:51:22,125 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:523 Converting data type of coordinate points of 'latitude' from 'float32' to 'float64' 2025-09-02 08:51:22,125 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:377 Saving: /projects/NS2980K-datalake/www/tomast/esmvaltool2.11.0/output/data_formatting_20250902_085121/Tier2/WOA/OBS6_WOA_clim_2018_Oyr_si_200001-200012.nc 2025-09-02 08:51:22,125 UTC [578664] INFO esmvaltool.cmorizers.data.utilities:379 Cube has lazy data [lazy is preferred] 2025-09-02 08:51:22,218 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:456 CMORization of dataset WOA finished! 2025-09-02 08:51:22,218 UTC [578664] INFO esmvaltool.cmorizers.data.cmorizer:340 Formatting successful for dataset WOA