2025-02-02 09:43:40,174 UTC [2931879] INFO esmvalcore._main:507 ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! 2025-02-02 09:43:40,174 UTC [2931879] INFO esmvalcore._main:508 Package versions 2025-02-02 09:43:40,174 UTC [2931879] INFO esmvalcore._main:509 ---------------- 2025-02-02 09:43:40,174 UTC [2931879] INFO esmvalcore._main:510 ESMValCore: 2.11.1 2025-02-02 09:43:40,175 UTC [2931879] INFO esmvalcore._main:512 ESMValTool: 2.11.0 2025-02-02 09:43:40,175 UTC [2931879] INFO esmvalcore._main:513 ---------------- 2025-02-02 09:43:40,175 UTC [2931879] INFO esmvalcore._main:514 Using config file /nird/home/tomast/.esmvaltool/config-user.yml 2025-02-02 09:43:40,175 UTC [2931879] INFO esmvalcore._main:515 Writing program log files to: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/main_log.txt /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/main_log_debug.txt /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/cmor_log.txt 2025-02-02 09:43:40,328 UTC [2931879] INFO esmvalcore.config._esgf_pyclient:62 Using default ESGF configuration, configuration file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml not present. 2025-02-02 09:43:40,473 UTC [2931879] INFO esmvalcore._main:91 Starting the Earth System Model Evaluation Tool at time: 2025-02-02 09:43:40 UTC 2025-02-02 09:43:40,474 UTC [2931879] INFO esmvalcore._main:95 ---------------------------------------------------------------------- 2025-02-02 09:43:40,474 UTC [2931879] INFO esmvalcore._main:96 RECIPE = /projects/NS2980K/home/tomast/ESMValTool/recipes-2.11.0/standard_recipes/ocean/recipe_combined_indices.yml 2025-02-02 09:43:40,474 UTC [2931879] INFO esmvalcore._main:97 RUNDIR = /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run 2025-02-02 09:43:40,474 UTC [2931879] INFO esmvalcore._main:98 WORKDIR = /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/work 2025-02-02 09:43:40,474 UTC [2931879] INFO esmvalcore._main:99 PREPROCDIR = /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc 2025-02-02 09:43:40,475 UTC [2931879] INFO esmvalcore._main:100 PLOTDIR = /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/plots 2025-02-02 09:43:40,476 UTC [2931879] INFO esmvalcore._main:101 ---------------------------------------------------------------------- 2025-02-02 09:43:40,476 UTC [2931879] INFO esmvalcore._main:104 Running tasks using at most 16 processes 2025-02-02 09:43:40,476 UTC [2931879] INFO esmvalcore._main:106 If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. 2025-02-02 09:43:40,476 UTC [2931879] INFO esmvalcore._main:109 If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. 2025-02-02 09:43:40,476 UTC [2931879] WARNING esmvalcore.config._dask:18 Using the Dask basic scheduler. This may lead to slow computations and out-of-memory errors. Note that the basic scheduler may still be the best choice for preprocessor functions that are not lazy. In that case, you can safely ignore this warning. See https://docs.esmvaltool.org/projects/ESMValCore/en/latest/quickstart/configure.html#dask-distributed-configuration for more information. 2025-02-02 09:43:40,478 UTC [2931879] DEBUG esmvalcore._recipe.check:61 Checking recipe against schema /projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_recipe/recipe_schema.yml 2025-02-02 09:43:40,489 UTC [2931879] DEBUG esmvalcore._recipe.to_datasets:347 Populating list of datasets for variable tos in diagnostic combine_indices 2025-02-02 09:43:40,490 UTC [2931879] DEBUG esmvalcore._recipe.to_datasets:371 Found Dataset: tos, Omon, CMIP5, MPI-ESM-MR, historical, r1i1p1 2025-02-02 09:43:40,490 UTC [2931879] DEBUG esmvalcore._recipe.to_datasets:371 Found Dataset: tos, Omon, CMIP5, bcc-csm1-1, historical, r1i1p1 2025-02-02 09:43:40,490 UTC [2931879] DEBUG esmvalcore._recipe.recipe:801 Retrieving diagnostics from recipe 2025-02-02 09:43:40,490 UTC [2931879] DEBUG esmvalcore._recipe.recipe:829 Setting script for diagnostic combine_indices 2025-02-02 09:43:40,491 UTC [2931879] INFO esmvalcore._recipe.recipe:1019 Creating tasks from recipe 2025-02-02 09:43:40,491 UTC [2931879] INFO esmvalcore._recipe.recipe:1028 Creating tasks for diagnostic combine_indices 2025-02-02 09:43:40,491 UTC [2931879] INFO esmvalcore._recipe.recipe:950 Creating diagnostic task combine_indices/main 2025-02-02 09:43:40,491 UTC [2931879] INFO esmvalcore._recipe.recipe:1003 Creating preprocessor task combine_indices/tos 2025-02-02 09:43:40,491 UTC [2931879] INFO esmvalcore._recipe.recipe:673 Creating preprocessor 'preprocessor1' task for variable 'tos' 2025-02-02 09:43:40,492 UTC [2931879] DEBUG esmvalcore.config._config:45 Loading extra facets from /projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config/extra_facets/cmip5-fx.yml 2025-02-02 09:43:40,492 UTC [2931879] DEBUG esmvalcore.config._config:45 Loading extra facets from /projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config/extra_facets/cmip5-institutes.yml 2025-02-02 09:43:40,509 UTC [2931879] DEBUG esmvalcore.config._config:45 Loading extra facets from /projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config/extra_facets/cmip5-product.yml 2025-02-02 09:43:40,513 UTC [2931879] DEBUG esmvalcore.local:439 Looking for files matching: /projects/NS9034K/CMIP5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1*.nc /scratch/tomast/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1*.nc 2025-02-02 09:43:40,515 UTC [2931879] DEBUG esmvalcore._recipe.recipe:270 Using input files for variable tos of dataset MPI-ESM-MR: /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc 2025-02-02 09:43:40,515 UTC [2931879] INFO esmvalcore._recipe.recipe:536 Found input files for Dataset: tos, Omon, CMIP5, MPI-ESM-MR, historical, r1i1p1, v20120625 2025-02-02 09:43:40,516 UTC [2931879] DEBUG esmvalcore.local:439 Looking for files matching: /projects/NS9034K/CMIP5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1*.nc /projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1*.nc /scratch/tomast/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/*/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1*.nc 2025-02-02 09:43:40,517 UTC [2931879] DEBUG esmvalcore._recipe.recipe:270 Using input files for variable tos of dataset bcc-csm1-1: /projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc 2025-02-02 09:43:40,517 UTC [2931879] INFO esmvalcore._recipe.recipe:536 Found input files for Dataset: tos, Omon, CMIP5, bcc-csm1-1, historical, r1i1p1, v20130329 2025-02-02 09:43:40,518 UTC [2931879] INFO esmvalcore._recipe.recipe:697 PreprocessingTask combine_indices/tos created. 2025-02-02 09:43:40,518 UTC [2931879] DEBUG esmvalcore._recipe.recipe:698 PreprocessingTask combine_indices/tos will create the files: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc 2025-02-02 09:43:40,518 UTC [2931879] DEBUG esmvalcore._recipe.recipe:878 Linking tasks for diagnostic combine_indices script main 2025-02-02 09:43:40,518 UTC [2931879] DEBUG esmvalcore._recipe.recipe:887 Pattern combine_indices/tos matches ['combine_indices/tos'] 2025-02-02 09:43:40,518 UTC [2931879] INFO esmvalcore._recipe.recipe:1068 These tasks will be executed: combine_indices/tos, combine_indices/main 2025-02-02 09:43:40,519 UTC [2931879] DEBUG esmvalcore._main:128 Recipe summary: DiagnosticTask: combine_indices/main script: magic_bsc/combined_indices.R settings: {'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'log_level': 'info', 'moninf': 12, 'monsup': 2, 'output_file_type': 'png', 'plot_dir': '/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/plots/combine_indices/main', 'profile_diagnostic': False, 'recipe': PosixPath('recipe_combined_indices.yml'), 'region': 'Nino3.4', 'run_dir': '/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main', 'running_mean': None, 'script': 'main', 'standardized': True, 'version': '2.11.1', 'work_dir': '/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/work/combine_indices/main'} ancestors: PreprocessingTask: combine_indices/tos order: ['regrid', 'remove_supplementary_variables', 'save'] PreprocessorFile: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] settings: {'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc')}} PreprocessorFile: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc input files: [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] settings: {'regrid': {'scheme': 'linear', 'target_grid': '1x1'}, 'remove_supplementary_variables': {}, 'save': {'compress': False, 'filename': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc')}} ancestors: None 2025-02-02 09:43:40,522 UTC [2931879] INFO esmvalcore._recipe.recipe:1131 Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/recipe_combined_indices_filled.yml 2025-02-02 09:43:40,522 UTC [2931879] DEBUG esmvalcore.esgf._download:538 All required data is available locally, not downloading anything. 2025-02-02 09:43:40,523 UTC [2931879] INFO esmvalcore.config._dask:70 Using the Dask basic scheduler. 2025-02-02 09:43:40,523 UTC [2931879] INFO esmvalcore._task:760 Running 2 tasks using 2 processes 2025-02-02 09:43:40,552 UTC [2932015] INFO esmvalcore._task:261 Starting task combine_indices/tos in process [2932015] 2025-02-02 09:43:40,649 UTC [2931879] INFO esmvalcore._task:793 Progress: 1 tasks running, 1 tasks waiting for ancestors, 0/2 done 2025-02-02 09:43:40,678 UTC [2932015] DEBUG esmvalcore.preprocessor:674 Running block ['regrid'] 2025-02-02 09:43:40,678 UTC [2932015] DEBUG esmvalcore.preprocessor:681 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc 2025-02-02 09:43:40,679 UTC [2932015] DEBUG esmvalcore.esgf._download:538 All required data is available locally, not downloading anything. 2025-02-02 09:43:40,679 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_file 2025-02-02 09:43:40,680 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/fixed_files/tos_Omon_CMIP5_MPI-ESM-MR_historical_r1i1p1_v20120625_'), add_unique_suffix = True, session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'MPI-ESM-MR', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 0, alias = 'MPI-ESM-MR', product = ['output1', 'output2'], institute = ['MPI-M'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20120625' 2025-02-02 09:43:40,683 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/fixed_files/tos_Omon_CMIP5_MPI-ESM-MR_historical_r1i1p1_v20120625_'), add_unique_suffix = True, session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'MPI-ESM-MR', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 0, alias = 'MPI-ESM-MR', product = ['output1', 'output2'], institute = ['MPI-M'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20120625' 2025-02-02 09:43:40,683 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step load 2025-02-02 09:43:40,683 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) ignore_warnings = None 2025-02-02 09:43:40,683 UTC [2932015] DEBUG esmvalcore.preprocessor._io:98 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc 2025-02-02 09:43:41,261 UTC [2932015] DEBUG esmvalcore.preprocessor._io:134 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc 2025-02-02 09:43:41,261 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) ignore_warnings = None 2025-02-02 09:43:41,261 UTC [2932015] DEBUG esmvalcore.preprocessor._io:98 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc 2025-02-02 09:43:41,413 UTC [2932015] DEBUG esmvalcore.preprocessor._io:134 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc 2025-02-02 09:43:41,413 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_metadata 2025-02-02 09:43:41,417 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_metadata' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) check_level = , session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'MPI-ESM-MR', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 0, alias = 'MPI-ESM-MR', product = ['output1', 'output2'], institute = ['MPI-M'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20120625' 2025-02-02 09:43:41,467 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step concatenate 2025-02-02 09:43:41,469 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'concatenate' on the data [, ] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) check_level = 2025-02-02 09:43:41,471 UTC [2932015] DEBUG esmvalcore.preprocessor._io:218 Using sea_surface_temperature / (K) (time: 1200; cell index along second dimension: 404; cell index along first dimension: 802) Dimension coordinates: time x - - cell index along second dimension - x - cell index along first dimension - - x Auxiliary coordinates: latitude - x x longitude - x x Cell methods: 0 time: mean Attributes: Conventions 'CF-1.4' associated_files 'baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_ocean_fx_MPI-ESM-MR_historical_r0i0p0.nc ...' branch_time 0.0 cmor_version '2.6.0' contact 'cmip5-mpi-esm@dkrz.de' experiment 'historical' experiment_id 'historical' forcing 'GHG,Oz,SD,Sl,Vl,LU' frequency 'mon' initialization_method 1 institute_id 'MPI-M' institution 'Max Planck Institute for Meteorology' model_id 'MPI-ESM-MR' modeling_realm 'ocean' parent_experiment 'N/A' parent_experiment_id 'N/A' parent_experiment_rip 'N/A' physics_version 1 product 'output' project_id 'CMIP5' realization 1 references 'ECHAM6: n/a; JSBACH: Raddatz et al., 2007. Will the tropical land biosphere ...' source 'MPI-ESM-MR 2011; URL: http://svn.zmaw.de/svn/cosmos/branches/releases/mpi-esm-cmip5/src/mod; ...' table_id 'Table Omon (27 April 2011) 340eddd4fd838d90fa9ffe1345ecbd73' title 'MPI-ESM-MR model output prepared for CMIP5 historical' 2025-02-02 09:43:41,472 UTC [2932015] DEBUG esmvalcore.preprocessor._io:252 Using sea_surface_temperature / (K) (time: 72; cell index along second dimension: 404; cell index along first dimension: 802) Dimension coordinates: time x - - cell index along second dimension - x - cell index along first dimension - - x Auxiliary coordinates: latitude - x x longitude - x x Cell methods: 0 time: mean Attributes: Conventions 'CF-1.4' associated_files 'baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_ocean_fx_MPI-ESM-MR_historical_r0i0p0.nc ...' branch_time 0.0 cmor_version '2.6.0' contact 'cmip5-mpi-esm@dkrz.de' experiment 'historical' experiment_id 'historical' forcing 'GHG,Oz,SD,Sl,Vl,LU' frequency 'mon' initialization_method 1 institute_id 'MPI-M' institution 'Max Planck Institute for Meteorology' model_id 'MPI-ESM-MR' modeling_realm 'ocean' parent_experiment 'N/A' parent_experiment_id 'N/A' parent_experiment_rip 'N/A' physics_version 1 product 'output' project_id 'CMIP5' realization 1 references 'ECHAM6: n/a; JSBACH: Raddatz et al., 2007. Will the tropical land biosphere ...' source 'MPI-ESM-MR 2011; URL: http://svn.zmaw.de/svn/cosmos/branches/releases/mpi-esm-cmip5/src/mod; ...' table_id 'Table Omon (27 April 2011) 340eddd4fd838d90fa9ffe1345ecbd73' title 'MPI-ESM-MR model output prepared for CMIP5 historical' 2025-02-02 09:43:41,532 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step cmor_check_metadata 2025-02-02 09:43:41,533 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'tos' 2025-02-02 09:43:41,548 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step clip_timerange 2025-02-02 09:43:41,549 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) timerange = '1950/2005' 2025-02-02 09:43:41,558 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_data 2025-02-02 09:43:41,559 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) check_level = , session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'MPI-ESM-MR', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 0, alias = 'MPI-ESM-MR', product = ['output1', 'output2'], institute = ['MPI-M'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20120625' 2025-02-02 09:43:41,560 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step cmor_check_data 2025-02-02 09:43:41,560 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'tos' 2025-02-02 09:43:41,561 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step add_supplementary_variables 2025-02-02 09:43:41,561 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) supplementary_cubes = [] 2025-02-02 09:43:41,561 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step regrid 2025-02-02 09:43:41,562 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2025-02-02 09:43:41,563 UTC [2932015] DEBUG esmvalcore.preprocessor._regrid:607 Loaded regridding scheme ESMPyLinear(mask_threshold=0.99) 2025-02-02 09:43:52,132 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step save 2025-02-02 09:43:52,134 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_190001-199912.nc'), LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/MPI-M/MPI-ESM-MR/historical/mon/ocean/Omon/r1i1p1/v20120625/tos/tos_Omon_MPI-ESM-MR_historical_r1i1p1_200001-200512.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc') 2025-02-02 09:43:52,134 UTC [2932015] DEBUG esmvalcore.preprocessor._io:408 Saving cube: sea_surface_temperature / (K) (time: 672; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Cell methods: 0 time: mean Attributes: Conventions 'CF-1.4' associated_files 'baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_ocean_fx_MPI-ESM-MR_historical_r0i0p0.nc ...' branch_time 0.0 cmor_version '2.6.0' contact 'cmip5-mpi-esm@dkrz.de' experiment 'historical' experiment_id 'historical' forcing 'GHG,Oz,SD,Sl,Vl,LU' frequency 'mon' initialization_method 1 institute_id 'MPI-M' institution 'Max Planck Institute for Meteorology' model_id 'MPI-ESM-MR' modeling_realm 'ocean' parent_experiment 'N/A' parent_experiment_id 'N/A' parent_experiment_rip 'N/A' physics_version 1 product 'output' project_id 'CMIP5' realization 1 references 'ECHAM6: n/a; JSBACH: Raddatz et al., 2007. Will the tropical land biosphere ...' source 'MPI-ESM-MR 2011; URL: http://svn.zmaw.de/svn/cosmos/branches/releases/mpi-esm-cmip5/src/mod; ...' table_id 'Table Omon (27 April 2011) 340eddd4fd838d90fa9ffe1345ecbd73' title 'MPI-ESM-MR model output prepared for CMIP5 historical' with realized data to /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_MPI-ESM-MR_Omon_historical_r1i1p1_tos_1950-2005.nc 2025-02-02 09:43:52,293 UTC [2932015] DEBUG esmvalcore.preprocessor:681 Applying single-model steps to PreprocessorFile: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc 2025-02-02 09:43:52,294 UTC [2932015] DEBUG esmvalcore.esgf._download:538 All required data is available locally, not downloading anything. 2025-02-02 09:43:52,294 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_file 2025-02-02 09:43:52,294 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_file' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) output_dir = PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/fixed_files/tos_Omon_CMIP5_bcc-csm1-1_historical_r1i1p1_v20130329_'), add_unique_suffix = True, session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'bcc-csm1-1', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 1, alias = 'bcc-csm1-1', product = ['output1', 'output2'], institute = ['BCC'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20130329' 2025-02-02 09:43:52,295 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step load 2025-02-02 09:43:52,295 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'load' on the data LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc') loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) ignore_warnings = None 2025-02-02 09:43:52,295 UTC [2932015] DEBUG esmvalcore.preprocessor._io:98 Loading: /projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc 2025-02-02 09:43:52,837 UTC [2932015] DEBUG esmvalcore.preprocessor._io:134 Done with loading /projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc 2025-02-02 09:43:52,837 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_metadata 2025-02-02 09:43:52,839 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_metadata' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) check_level = , session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'bcc-csm1-1', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 1, alias = 'bcc-csm1-1', product = ['output1', 'output2'], institute = ['BCC'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20130329' 2025-02-02 09:43:52,918 UTC [2932015] DEBUG esmvalcore.cmor._fixes.fix.genericfix:401 Shifted longitude to [0, 360] (for file /projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc) 2025-02-02 09:43:52,922 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step concatenate 2025-02-02 09:43:52,923 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'concatenate' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) check_level = 2025-02-02 09:43:52,923 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step cmor_check_metadata 2025-02-02 09:43:52,924 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'cmor_check_metadata' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'tos' 2025-02-02 09:43:52,927 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step clip_timerange 2025-02-02 09:43:52,928 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'clip_timerange' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) timerange = '1950/2005' 2025-02-02 09:43:52,936 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step fix_data 2025-02-02 09:43:52,937 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'fix_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) check_level = , session = Session({'auxiliary_data_dir': PosixPath('/projects/NS9560K-datalake/ESGF/auxiliary_data'), 'check_level': , 'compress_netcdf': False, 'config_developer_file': PosixPath('/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/config-developer.yml'), 'config_file': PosixPath('/nird/home/tomast/.esmvaltool/config-user.yml'), 'diagnostics': None, 'download_dir': PosixPath('/scratch/tomast/ESGF'), 'drs': {'CMIP3': 'DKRZ', 'CMIP5': 'DKRZ', 'CMIP6': 'DKRZ', 'CORDEX': 'DKRZ', 'OBS': 'default', 'OBS6': 'default', 'ana4mips': 'default', 'native6': 'default', 'obs4MIPs': 'default'}, 'exit_on_warning': False, 'extra_facets_dir': (), 'log_level': 'info', 'max_datasets': None, 'max_parallel_tasks': 16, 'max_years': None, 'output_dir': PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output'), 'output_file_type': 'png', 'profile_diagnostic': False, 'remove_preproc_dir': True, 'resume_from': [], 'rootpath': {'CMIP3': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip3')], 'CMIP5': [PosixPath('/projects/NS9560K-datalake/ESGF/cmip5/output1'), PosixPath('/projects/NS9034K/CMIP5/output1'), PosixPath('/scratch/tomast/ESGF/cmip5/output1')], 'CMIP6': [PosixPath('/projects/NS9560K-datalake/ESGF/CMIP6'), PosixPath('/projects/NS9034K/CMIP6'), PosixPath('/projects/NS9252K/KeyCLIM_CMOR'), PosixPath('/scratch/tomast/ESGF/CMIP6')], 'OBS': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'OBS6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obsdata')], 'RAWOBS': [PosixPath('/projects/NS9560K-datalake/ESGF/rawdata/obs'), PosixPath('/scratch/tomast/ESGF/rawdata/obs')], 'ana4mips': [PosixPath('/projects/NS9560K-datalake/ESGF/ana4mips'), PosixPath('/scratch/tomast/ESGF/ana4mips')], 'default': [PosixPath('/scratch/tomast/ESGF/obsdata')], 'native6': [PosixPath('/projects/NS9560K-datalake/ESGF/obsdata/native6'), PosixPath('/scratch/tomast/ESGF/obsdata/native6')], 'obs4MIPs': [PosixPath('/projects/NS9560K-datalake/ESGF/obs4MIPs'), PosixPath('/projects/NS9560K-datalake/ESGF/obsdata'), PosixPath('/scratch/tomast/ESGF/obs4MIPs')]}, 'run_diagnostic': True, 'save_intermediary_cubes': False, 'search_esgf': 'when_missing', 'skip_nonexistent': False, 'write_ncl_interface': False}), preprocessor = 'preprocessor1', mip = 'Omon', dataset = 'bcc-csm1-1', project = 'CMIP5', exp = 'historical', ensemble = 'r1i1p1', short_name = 'tos', timerange = '1950/2005', variable_group = 'tos', diagnostic = 'combine_indices', recipe_dataset_index = 1, alias = 'bcc-csm1-1', product = ['output1', 'output2'], institute = ['BCC'], original_short_name = 'tos', standard_name = 'sea_surface_temperature', long_name = 'Sea Surface Temperature', units = 'K', modeling_realm = ['ocean'], frequency = 'mon', version = 'v20130329' 2025-02-02 09:43:52,937 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step cmor_check_data 2025-02-02 09:43:52,938 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'cmor_check_data' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) check_level = , cmor_table = 'CMIP5', mip = 'Omon', frequency = 'mon', short_name = 'tos' 2025-02-02 09:43:52,938 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step add_supplementary_variables 2025-02-02 09:43:52,939 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'add_supplementary_variables' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) supplementary_cubes = [] 2025-02-02 09:43:52,939 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step regrid 2025-02-02 09:43:52,940 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'regrid' on the data loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) target_grid = '1x1', scheme = 'linear' 2025-02-02 09:43:52,940 UTC [2932015] DEBUG esmvalcore.preprocessor._regrid:607 Loaded regridding scheme ESMPyLinear(mask_threshold=0.99) 2025-02-02 09:43:57,102 UTC [2932015] DEBUG esmvalcore.preprocessor:387 Running preprocessor step save 2025-02-02 09:43:57,103 UTC [2932015] DEBUG esmvalcore.preprocessor:341 Running preprocessor function 'save' on the data [] loaded from original input file(s) [LocalFile('/projects/NS9560K-datalake/ESGF/cmip5/output1/BCC/bcc-csm1-1/historical/mon/ocean/Omon/r1i1p1/v20130329/tos/tos_Omon_bcc-csm1-1_historical_r1i1p1_185001-201212.nc')] with function argument(s) compress = False, filename = PosixPath('/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc') 2025-02-02 09:43:57,103 UTC [2932015] DEBUG esmvalcore.preprocessor._io:408 Saving cube: sea_surface_temperature / (K) (time: 672; latitude: 180; longitude: 360) Dimension coordinates: time x - - latitude - x - longitude - - x Cell methods: 0 time: mean Attributes: Conventions 'CF-1.4' associated_files 'baseURL: http://cmip-pcmdi.llnl.gov/CMIP5/dataLocation gridspecFile: gridspec_ocean_fx_bcc-csm1-1_historical_r0i0p0.nc ...' branch_time 470.0 cmor_version '2.5.6' contact 'Dr. Tongwen Wu (twwu@cma.gov.cn)' experiment 'historical' experiment_id 'historical' forcing 'Nat Ant GHG SD Oz Sl Vl SS Ds BC OC' frequency 'mon' initialization_method 1 institute_id 'BCC' institution 'Beijing Climate Center(BCC),China Meteorological Administration,China' model_id 'bcc-csm1-1' modeling_realm 'ocean' original_name 'SST' parent_experiment 'pre-industrial control' parent_experiment_id 'piControl' parent_experiment_rip 'r1i1p1' physics_version 1 product 'output' project_id 'CMIP5' realization 1 source 'bcc-csm1-1:atmosphere: BCC_AGCM2.1 (T42L26); land: BCC_AVIM1.0;ocean: ...' table_id 'Table Omon (31 January 2011) d2d6beec2b8fea5bbed33920a6e08bbe' title 'bcc-csm1-1 model output prepared for CMIP5 historical' with realized data to /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/preproc/combine_indices/tos/CMIP5_bcc-csm1-1_Omon_historical_r1i1p1_tos_1950-2005.nc 2025-02-02 09:43:57,214 UTC [2932015] INFO esmvalcore._task:266 Successfully completed task combine_indices/tos (priority 1) in 0:00:16.661061 2025-02-02 09:43:57,264 UTC [2931879] INFO esmvalcore._task:793 Progress: 0 tasks running, 1 tasks waiting for ancestors, 1/2 done 2025-02-02 09:43:57,268 UTC [2932016] INFO esmvalcore._task:261 Starting task combine_indices/main in process [2932016] 2025-02-02 09:43:57,270 UTC [2932016] INFO esmvalcore._task:502 Running command ['/projects/NS2980K/conda/esmvaltool2.11.0/bin/Rscript', '/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvaltool/diag_scripts/magic_bsc/combined_indices.R', '/projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main/settings.yml'] 2025-02-02 09:43:57,270 UTC [2932016] DEBUG esmvalcore._task:503 in environment {'diag_scripts': '/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvaltool/diag_scripts'} 2025-02-02 09:43:57,270 UTC [2932016] DEBUG esmvalcore._task:505 in current working directory: /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main 2025-02-02 09:43:57,270 UTC [2932016] INFO esmvalcore._task:506 Writing output to /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/work/combine_indices/main 2025-02-02 09:43:57,270 UTC [2932016] INFO esmvalcore._task:507 Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/plots/combine_indices/main 2025-02-02 09:43:57,270 UTC [2932016] INFO esmvalcore._task:508 Writing log to /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main/log.txt 2025-02-02 09:43:57,270 UTC [2932016] INFO esmvalcore._task:518 To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main; diag_scripts="/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvaltool/diag_scripts" /projects/NS2980K/conda/esmvaltool2.11.0/bin/Rscript /projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvaltool/diag_scripts/magic_bsc/combined_indices.R /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main/settings.yml 2025-02-02 09:43:57,364 UTC [2931879] INFO esmvalcore._task:793 Progress: 1 tasks running, 0 tasks waiting for ancestors, 1/2 done 2025-02-02 09:43:59,274 UTC [2932016] INFO esmvalcore._task:128 Maximum memory used (estimate): 0.1 GB 2025-02-02 09:43:59,275 UTC [2932016] INFO esmvalcore._task:130 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2025-02-02 09:44:00,415 UTC [2931879] INFO esmvalcore._task:128 Maximum memory used (estimate): 2.9 GB 2025-02-02 09:44:00,416 UTC [2931879] INFO esmvalcore._task:130 Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. 2025-02-02 09:44:00,416 UTC [2931879] ERROR esmvalcore._main:545 Program terminated abnormally, see stack trace below for more information: multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) ^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 816, in _run_task output_files = task.run() ^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 264, in run self.output_files = self._run(input_files) ^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 595, in _run raise DiagnosticError( esmvalcore._task.DiagnosticError: Diagnostic script magic_bsc/combined_indices.R failed with return code 1. See the log in /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main/log.txt """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 533, in run fire.Fire(ESMValTool()) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/fire/core.py", line 135, in Fire component_trace = _Fire(component, args, parsed_flag_args, context, name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/fire/core.py", line 468, in _Fire component, remaining_args = _CallAndUpdateTrace( ^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/fire/core.py", line 684, in _CallAndUpdateTrace component = fn(*varargs, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 413, in run self._run(recipe, session) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 455, in _run process_recipe(recipe_file=recipe, session=session) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 130, in process_recipe recipe.run() File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_recipe/recipe.py", line 1095, in run self.tasks.run(max_parallel_tasks=self.session['max_parallel_tasks']) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 738, in run self._run_parallel(address, max_parallel_tasks) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 782, in _run_parallel _copy_results(task, running[task]) File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 805, in _copy_results task.output_files, task.products = future.get() ^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.11.0/lib/python3.11/multiprocessing/pool.py", line 774, in get raise self._value esmvalcore._task.DiagnosticError: Diagnostic script magic_bsc/combined_indices.R failed with return code 1. See the log in /projects/NS2980K/www/tomast/esmvaltool2.11.0/output/recipe_combined_indices_20250202_094340/run/combine_indices/main/log.txt 2025-02-02 09:44:00,418 UTC [2931879] INFO esmvalcore._main:549 If you have a question or need help, please start a new discussion on https://github.com/ESMValGroup/ESMValTool/discussions If you suspect this is a bug, please open an issue on https://github.com/ESMValGroup/ESMValTool/issues To make it easier to find out what the problem is, please consider attaching the files run/recipe_*.yml and run/main_log_debug.txt from the output directory.