INFO [1115987] ______________________________________________________________________ _____ ____ __ ____ __ _ _____ _ | ____/ ___|| \/ \ \ / /_ _| |_ _|__ ___ | | | _| \___ \| |\/| |\ \ / / _` | | | |/ _ \ / _ \| | | |___ ___) | | | | \ V / (_| | | | | (_) | (_) | | |_____|____/|_| |_| \_/ \__,_|_| |_|\___/ \___/|_| ______________________________________________________________________ ESMValTool - Earth System Model Evaluation Tool. http://www.esmvaltool.org CORE DEVELOPMENT TEAM AND CONTACTS: Birgit Hassler (Co-PI; DLR, Germany - birgit.hassler@dlr.de) Alistair Sellar (Co-PI; Met Office, UK - alistair.sellar@metoffice.gov.uk) Bouwe Andela (Netherlands eScience Center, The Netherlands - b.andela@esciencecenter.nl) Lee de Mora (PML, UK - ledm@pml.ac.uk) Niels Drost (Netherlands eScience Center, The Netherlands - n.drost@esciencecenter.nl) Veronika Eyring (DLR, Germany - veronika.eyring@dlr.de) Bettina Gier (UBremen, Germany - gier@uni-bremen.de) Remi Kazeroni (DLR, Germany - remi.kazeroni@dlr.de) Nikolay Koldunov (AWI, Germany - nikolay.koldunov@awi.de) Axel Lauer (DLR, Germany - axel.lauer@dlr.de) Saskia Loosveldt-Tomas (BSC, Spain - saskia.loosveldt@bsc.es) Ruth Lorenz (ETH Zurich, Switzerland - ruth.lorenz@env.ethz.ch) Benjamin Mueller (LMU, Germany - b.mueller@iggf.geo.uni-muenchen.de) Valeriu Predoi (URead, UK - valeriu.predoi@ncas.ac.uk) Mattia Righi (DLR, Germany - mattia.righi@dlr.de) Manuel Schlund (DLR, Germany - manuel.schlund@dlr.de) Breixo Solino Fernandez (DLR, Germany - breixo.solinofernandez@dlr.de) Javier Vegas-Regidor (BSC, Spain - javier.vegas@bsc.es) Klaus Zimmermann (SMHI, Sweden - klaus.zimmermann@smhi.se) For further help, please read the documentation at http://docs.esmvaltool.org. Have fun! INFO [1115987] Package versions INFO [1115987] ---------------- INFO [1115987] ESMValCore: 2.10.0 INFO [1115987] ESMValTool: 2.10.0 INFO [1115987] ---------------- INFO [1115987] Using config file /nird/home/tomast/.esmvaltool/config-user.yml INFO [1115987] Writing program log files to: /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/main_log.txt /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/main_log_debug.txt INFO [1115987] Using default ESGF configuration, configuration file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml not present. WARNING [1115987] ESGF credentials missing, only data that is accessible without logging in will be available. See https://esgf.github.io/esgf-user-support/user_guide.html for instructions on how to create an account if you do not have one yet. Next, configure your system so esmvaltool can use your credentials. This can be done using the keyring package, or you can just enter them in /nird/home/tomast/.esmvaltool/esgf-pyclient.yml. keyring ======= First install the keyring package (requires a supported backend, see https://pypi.org/project/keyring/): $ pip install keyring Next, set your username and password by running the commands: $ keyring set ESGF hostname $ keyring set ESGF username $ keyring set ESGF password To check that you entered your credentials correctly, run: $ keyring get ESGF hostname $ keyring get ESGF username $ keyring get ESGF password configuration file ================== You can store the hostname, username, and password or your OpenID account in a plain text in the file /nird/home/tomast/.esmvaltool/esgf-pyclient.yml like this: logon: hostname: "your-hostname" username: "your-username" password: "your-password" or your can configure an interactive log in: logon: interactive: true Note that storing your password in plain text in the configuration file is less secure. On shared systems, make sure the permissions of the file are set so only you can read it, i.e. $ ls -l /nird/home/tomast/.esmvaltool/esgf-pyclient.yml shows permissions -rw-------. INFO [1115987] Starting the Earth System Model Evaluation Tool at time: 2024-03-21 14:34:30 UTC INFO [1115987] ---------------------------------------------------------------------- INFO [1115987] RECIPE = /projects/NS2980K/home/tomast/ESMValTool/recipes-2.10.0/data_extraction/recipe_pH_NorESM2.yml INFO [1115987] RUNDIR = /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run INFO [1115987] WORKDIR = /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/work INFO [1115987] PREPROCDIR = /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/preproc INFO [1115987] PLOTDIR = /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/plots INFO [1115987] ---------------------------------------------------------------------- INFO [1115987] Running tasks using at most 4 processes INFO [1115987] If your system hangs during execution, it may not have enough memory for keeping this number of tasks in memory. INFO [1115987] If you experience memory problems, try reducing 'max_parallel_tasks' in your user configuration file. WARNING [1115987] Using the Dask basic scheduler. This may lead to slow computations and out-of-memory errors. Note that the basic scheduler may still be the best choice for preprocessor functions that are not lazy. In that case, you can safely ignore this warning. See https://docs.esmvaltool.org/projects/ESMValCore/en/latest/quickstart/configure.html#dask-distributed-configuration for more information. INFO [1115987] Creating tasks from recipe INFO [1115987] Creating tasks for diagnostic time_average_1986-2005 INFO [1115987] Creating diagnostic task time_average_1986-2005/plot_map INFO [1115987] Creating preprocessor task time_average_1986-2005/tos INFO [1115987] Creating preprocessor 'preprocessor_time' task for variable 'tos' INFO [1115987] Found input files for Dataset: tos, Omon, CMIP6, NorESM2-LM, CMIP, historical, r1i1p1f1, gn, v20190815 INFO [1115987] PreprocessingTask time_average_1986-2005/tos created. INFO [1115987] These tasks will be executed: time_average_1986-2005/plot_map, time_average_1986-2005/tos INFO [1115987] Wrote recipe with version numbers and wildcards to: file:///projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/recipe_pH_NorESM2_filled.yml INFO [1115987] Using the Dask basic scheduler. INFO [1115987] Running 2 tasks using 2 processes INFO [1116128] Starting task time_average_1986-2005/tos in process [1116128] INFO [1115987] Progress: 1 tasks running, 1 tasks waiting for ancestors, 0/2 done INFO [1116128] Successfully completed task time_average_1986-2005/tos (priority 1) in 0:00:00.937575 INFO [1115987] Progress: 0 tasks running, 1 tasks waiting for ancestors, 1/2 done INFO [1116129] Starting task time_average_1986-2005/plot_map in process [1116129] INFO [1116129] Running command ['/projects/NS2980K/conda/esmvaltool2.10.0/bin/python', '/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py', '/projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map/settings.yml'] INFO [1116129] Writing output to /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/work/time_average_1986-2005/plot_map INFO [1116129] Writing plots to /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/plots/time_average_1986-2005/plot_map INFO [1116129] Writing log to /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map/log.txt INFO [1116129] To re-run this diagnostic script, run: cd /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map; MPLBACKEND="Agg" /projects/NS2980K/conda/esmvaltool2.10.0/bin/python /projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvaltool/diag_scripts/ocean/diagnostic_maps.py /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map/settings.yml INFO [1115987] Progress: 1 tasks running, 0 tasks waiting for ancestors, 1/2 done INFO [1116129] Maximum memory used (estimate): 0.3 GB INFO [1116129] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. INFO [1115987] Maximum memory used (estimate): 1.4 GB INFO [1115987] Sampled every second. It may be inaccurate if short but high spikes in memory consumption occur. ERROR [1115987] Program terminated abnormally, see stack trace below for more information: multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) ^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 816, in _run_task output_files = task.run() ^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 264, in run self.output_files = self._run(input_files) ^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 595, in _run raise DiagnosticError( esmvalcore._task.DiagnosticError: Diagnostic script ocean/diagnostic_maps.py failed with return code 1. See the log in /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map/log.txt """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 518, in run fire.Fire(ESMValTool()) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/fire/core.py", line 141, in Fire component_trace = _Fire(component, args, parsed_flag_args, context, name) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/fire/core.py", line 475, in _Fire component, remaining_args = _CallAndUpdateTrace( ^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/fire/core.py", line 691, in _CallAndUpdateTrace component = fn(*varargs, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 405, in run self._run(recipe, session) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 447, in _run process_recipe(recipe_file=recipe, session=session) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_main.py", line 130, in process_recipe recipe.run() File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_recipe/recipe.py", line 1075, in run self.tasks.run(max_parallel_tasks=self.session['max_parallel_tasks']) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 738, in run self._run_parallel(address, max_parallel_tasks) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 782, in _run_parallel _copy_results(task, running[task]) File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/site-packages/esmvalcore/_task.py", line 805, in _copy_results task.output_files, task.products = future.get() ^^^^^^^^^^^^ File "/projects/NS2980K/conda/esmvaltool2.10.0/lib/python3.11/multiprocessing/pool.py", line 774, in get raise self._value esmvalcore._task.DiagnosticError: Diagnostic script ocean/diagnostic_maps.py failed with return code 1. See the log in /projects/NS2980K/www/tomast/esmvaltool2.10.0/output/recipe_pH_NorESM2_20240321_143429/run/time_average_1986-2005/plot_map/log.txt INFO [1115987] If you have a question or need help, please start a new discussion on https://github.com/ESMValGroup/ESMValTool/discussions If you suspect this is a bug, please open an issue on https://github.com/ESMValGroup/ESMValTool/issues To make it easier to find out what the problem is, please consider attaching the files run/recipe_*.yml and run/main_log_debug.txt from the output directory.