################## SETUP ##################

################
# Data Sources #
################
data_sources:
    # sname is any string used as a nickname for this configuration. It will be
    ### used as the name of the folder your computed notebooks are put in
    sname: quick-run

    # run_dir is the path to the folder you want
    ### all the files associated with this configuration
    ### to be created in
    run_dir: .

    # nb_path_root is the path to the folder that cupid will
    ### look for your template notebooks in. It doesn't have to
    ### be inside run_dir, or be specific to this project, as
    ### long as the notebooks are there
    nb_path_root: /nird/home/tomast/src/CUPiD/nblibrary

######################
# Computation Config #
######################

computation_config:

    # default_kernel_name is the name of the environment that
    ### the notebooks in this configuration will be run in by default.
    ### It must already be installed on your machine. You can also
    ### specify a different environment than the default for any
    ### notebook in NOTEBOOK CONFIG

    default_kernel_name: cupid-analysis

    log_level: 'info'

############# NOTEBOOK CONFIG #############

############################
# Notebooks and Parameters #
############################

# All parameters under global_params get passed to all the notebooks

global_params:
  CESM_output_dir: /projects/NS2980K/data/modeldata/NorESM/cases/
  lc_kwargs:
    threads_per_worker: 1

timeseries:
  num_procs: 8
  ts_done: [False]
  overwrite_ts: [False]
  case_name: 'N1850esm_f19_tn14_noresm2.0.7_TIPMIP_esm-piControl_20240807'

  atm:
    vars: ['ACTNI', 'ACTNL', 'ACTREI', 'ACTREL']
    derive_vars: [] # {'PRECT':['PRECL', 'PRECC'], 'RESTOM':['FLNT', 'FSNT']}
    hist_str: 'h0'
    start_years: [1756]
    end_years: [1758]
    level: 'lev'

  lnd:
    vars: ['ALTMAX', 'COST_NACTIVE', 'DENIT', 'EFLX_DYNBAL']  #['process_all']
    derive_vars: []
    hist_str: 'h0'
    start_years: [1756]
    end_years: [1758]
    level: 'lev'

  ocn:
    vars: ['taux', 'tauy'] # ['process_all']
    derive_vars: []
    hist_str: 'hm'
    start_years: [1756]
    end_years: [1758]
    level: 'lev'

  ice:
    vars: ['hi', 'hs', 'snowfrac'] #['process_all']
    derive_vars: []
    hist_str: 'h'
    start_years: [1756]
    end_years: [1758]
    level: 'lev'

  # glc:
  #   vars: ['usurf', 'topg'] #['process_all']
  #   derive_vars: []
  #   hist_str: 'initial_hist'
  #   start_years: [1756]
  #   end_years: [1758]
  #   level: 'lev'

compute_notebooks:

  # This is where all the notebooks you want run and their
  # parameters are specified. Several examples of different
  # types of notebooks are provided.

  # The first key (here simple_no_params_nb) is the name of the
  # notebook from nb_path_root, minus the .ipynb

    infrastructure:
      index:
        parameter_groups:
          none: {}

    atm:
      adf_quick_run:
        parameter_groups:
          none:
            adf_path: /nird/home/tomast/src/CUPiD/externals/ADF
            config_path: .
            # config_fil_str: "config_cam_baseline_example.yaml"

    # ocn:
    #   ocean_surface:
    #     parameter_groups:
    #       none:
    #         Case: b.e23_alpha16b.BLT1850.ne30_t232.054
    #         savefigs: False
    #         mom6_tools_config:
    #           start_date: '0091-01-01'
    #           end_date: '0101-01-01'
    #           Fnames:
    #             native: 'mom6.h.native.????-??.nc'
    #             static: 'mom6.h.static.nc'
    #           oce_cat: /glade/u/home/gmarques/libs/oce-catalogs/reference-datasets.yml

    # lnd:
    #   land_comparison:
    #     parameter_groups:
    #       none:
    #         cases:
    #           - ctsm51d159_f45_GSWP3_bgccrop_1850pAD
    #           - ctsm51d159_f45_GSWP3_bgccrop_1850pSASU
    #         type:
    #           - 1850pAD
    #           - 1850pSASU

    # ice:
    #   seaice:
    #     parameter_groups:
    #       none:
    #         cases:
    #           - g.e23_a16g.GJRAv4.TL319_t232_hycom1_N75.2024.005
    #           - g.e23_a16g.GJRAv4.TL319_t232_zstar_N65.2024.004
    #         begyr1: 245
    #         endyr1: 305
    #         begyr2: 245
    #         endyr2: 305
    #         nyears: 25

########### JUPYTER BOOK CONFIG ###########

##################################
# Jupyter Book Table of Contents #
##################################
book_toc:

  # See https://jupyterbook.org/en/stable/structure/configure.html for
  # complete documentation of Jupyter book construction options

  format: jb-book

  # All filenames are notebook filename without the .ipynb, similar to above

  root: infrastructure/index # root is the notebook that will be the homepage for the book
  parts:

    # Parts group notebooks into different sections in the Jupyter book
    # table of contents, so you can organize different parts of your project.

    - caption: Atmosphere

      # Each chapter is the name of one of the notebooks that you executed
      # in compute_notebooks above, also without .ipynb
      chapters:
        - file: atm/adf_quick_run

    - caption: Ocean
      chapters:
          - file: ocn/ocean_surface

    - caption: Land
      chapters:
        - file: lnd/land_comparison

    - caption: Sea Ice
      chapters:
        - file: ice/seaice

#####################################
# Keys for Jupyter Book _config.yml #
#####################################
book_config_keys:

  title: Example project   # Title of your jupyter book

  # Other keys can be added here, see https://jupyterbook.org/en/stable/customize/config.html
  ### for many more options